Os11g0607200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os11g0607200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.56 | 0.44 | 13.4 | 1.65 | 1.11 | -1.13 | -0.486 | 0.257 | 1.02 | 20.6 | 76.69 | 1229 | -- | -- |
| 87.64 | 0.436 | 13.4 | 1.63 | 1.11 | -1.11 | -0.462 | -- | 1.02 | 20.6 | 76.51 | 1231 | -- | -- |
| 88.31 | 0.438 | 13.4 | 1.66 | 1.11 | -1.14 | -- | 0.171 | 1.02 | 20.6 | 76.56 | 1228 | -- | -- |
| 88.33 | 0.438 | 13.4 | 1.64 | 1.11 | -1.12 | -- | -- | 1.02 | 20.6 | 76.46 | 1228 | -- | -- |
| 150.37 | 0.571 | 13.4 | 1.62 | -- | -1.03 | -- | 0.359 | 1.04 | -- | 82.82 | 1394 | -- | -- |
| 115.63 | 0.504 | 13.4 | 1.42 | 1.05 | -- | -0.598 | -- | 1.08 | 20 | -- | -- | -- | -- |
| 116.69 | 0.506 | 13.4 | 1.44 | 1.05 | -- | -- | -- | 1.08 | 20 | -- | -- | -- | -- |
| 150.43 | 0.571 | 13.3 | 1.6 | -- | -1.03 | -- | -- | 1.04 | -- | 82.28 | 1399 | -- | -- |
| 123 | 0.517 | 13.4 | -- | 1.07 | -1.45 | -- | -- | 0.952 | 19.8 | 67.39 | 30706 | -- | -- |
| 176.64 | 0.621 | 13.3 | 1.43 | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
| 171.4 | 0.612 | 13.4 | -- | 1.04 | -- | -- | -- | 0.921 | 20.1 | -- | -- | -- | -- |
| 180.35 | 0.625 | 13.4 | -- | -- | -1.56 | -- | -- | 0.848 | -- | 67.2 | 30236 | -- | -- |
| 230.6 | 0.709 | 13.4 | -- | -- | -- | -- | -- | 0.909 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.55 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 2 | 88.71 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 5 | 88.94 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 7 | 89.21 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 16 | 89.46 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 30 | 89.56 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 31 | 89.57 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 45 | 89.63 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 65 | 89.66 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 13 |
| 81 | 89.71 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 15 |
| 85 | 89.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 18 |
| 93 | 89.76 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 162 | 89.95 | humidity | 60 | 1440 | > th | dose independent | sin | 16 | NA |
| 167 | 89.95 | humidity | 70 | 1440 | < th | dose dependent | sin | 16 | NA |
| 179 | 89.98 | humidity | 60 | 1440 | < th | dose independent | sin | 17 | NA |
| 275 | 90.52 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 328 | 90.67 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 509 | 91.01 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 510 | 91.02 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 525 | 91.08 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 621 | 91.31 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 650 | 91.40 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 681 | 91.48 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 732 | 91.53 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 822 | 91.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 825 | 91.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 831 | 91.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 832 | 91.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 840 | 91.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 847 | 91.62 | humidity | 60 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 851 | 91.63 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 980 | 91.72 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 990 | 91.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 993 | 91.76 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 998 | 91.76 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |