Os11g0606900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0606900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 271.95 | 0.775 | 3.16 | -0.0363 | 0.335 | 1.57 | 0.521 | 3.42 | -0.166 | 14.4 | 22.2 | 310 | -- | -- |
| 279.5 | 0.779 | 3.1 | 0.251 | 0.275 | 0.721 | 0.119 | -- | -0.0623 | 14.9 | 26.07 | 517 | -- | -- |
| 272.77 | 0.769 | 3.15 | 0.0126 | 0.328 | 1.64 | -- | 3.43 | -0.162 | 14.4 | 21.88 | 316 | -- | -- |
| 279.48 | 0.779 | 3.1 | 0.271 | 0.264 | 0.734 | -- | -- | -0.0576 | 15.3 | 26.11 | 524 | -- | -- |
| 278.79 | 0.778 | 3.16 | 0.00479 | -- | 1.63 | -- | 3.54 | -0.183 | -- | 21.54 | 331 | -- | -- |
| 287.78 | 0.795 | 3.13 | 0.0595 | 0.245 | -- | 0.142 | -- | -0.227 | 13.4 | -- | -- | -- | -- |
| 287.86 | 0.795 | 3.13 | 0.0645 | 0.245 | -- | -- | -- | -0.226 | 13.5 | -- | -- | -- | -- |
| 281.54 | 0.781 | 3.1 | 0.289 | -- | 0.79 | -- | -- | -0.0526 | -- | 26.63 | 962 | -- | -- |
| 281.22 | 0.781 | 3.1 | -- | 0.262 | 0.667 | -- | -- | -0.0782 | 15.2 | 26.43 | 542 | -- | -- |
| 291.55 | 0.798 | 3.14 | 0.0548 | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
| 287.97 | 0.794 | 3.13 | -- | 0.244 | -- | -- | -- | -0.233 | 13.5 | -- | -- | -- | -- |
| 283.43 | 0.784 | 3.11 | -- | -- | 0.666 | -- | -- | -0.11 | -- | 26.2 | 878 | -- | -- |
| 291.63 | 0.797 | 3.14 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.36 | wind | 9 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 3 | 268.61 | wind | 1 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 10 | 270.61 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 18 | 271.16 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 19 | 271.18 | wind | 3 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 24 | 271.27 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 29 | 271.62 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 31 | 271.70 | wind | 3 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 34 | 271.74 | temperature | 20 | 270 | < th | dose dependent | sin | 23 | NA |
| 44 | 272.07 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 51 | 272.19 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 54 | 272.29 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 69 | 272.63 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 72 | 272.66 | wind | 5 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 84 | 272.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 93 | 272.93 | humidity | 80 | 270 | < th | dose independent | rect. | 23 | 1 |
| 94 | 272.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 98 | 272.95 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 101 | 272.96 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 109 | 272.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 118 | 273.03 | temperature | 25 | 270 | < th | dose dependent | sin | 6 | NA |
| 122 | 273.08 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 153 | 273.35 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 177 | 273.52 | humidity | 80 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 201 | 273.63 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 206 | 273.68 | wind | 3 | 90 | > th | dose independent | rect. | 4 | 1 |
| 214 | 273.71 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 235 | 273.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 244 | 273.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 252 | 273.89 | wind | 5 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 253 | 273.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 260 | 273.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 301 | 274.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 306 | 274.10 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 307 | 274.11 | wind | 5 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 316 | 274.14 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 324 | 274.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 331 | 274.19 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 363 | 274.29 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 14 |
| 369 | 274.31 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 23 |
| 380 | 274.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 395 | 274.37 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 15 |
| 396 | 274.38 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 2 |
| 415 | 274.40 | temperature | 20 | 270 | < th | dose dependent | rect. | 20 | 12 |
| 427 | 274.42 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 19 |
| 444 | 274.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 456 | 274.48 | wind | 5 | 1440 | > th | dose independent | sin | 10 | NA |
| 457 | 274.48 | wind | 5 | 1440 | < th | dose independent | sin | 10 | NA |
| 484 | 274.51 | temperature | 20 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 495 | 274.52 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 510 | 274.53 | wind | 5 | 1440 | > th | dose dependent | rect. | 21 | 11 |
| 526 | 274.55 | temperature | 20 | 270 | > th | dose independent | sin | 0 | NA |
| 545 | 274.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 558 | 274.58 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 22 |
| 564 | 274.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 571 | 274.60 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 23 |
| 602 | 274.64 | wind | 1 | 90 | < th | dose independent | rect. | 13 | 1 |
| 634 | 274.69 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 655 | 274.72 | temperature | 20 | 270 | < th | dose independent | sin | 0 | NA |
| 697 | 274.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 786 | 274.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 788 | 274.94 | temperature | 25 | 1440 | < th | dose dependent | sin | 20 | NA |
| 811 | 274.98 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 847 | 275.06 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 23 |
| 857 | 275.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 930 | 275.23 | wind | 9 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 960 | 275.29 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 21 |