Os11g0606500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0606500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.53 | 0.541 | 9.95 | 0.346 | 2 | -2.93 | -2.39 | 2.85 | -0.52 | 14.2 | 29.5 | 383 | 20.1 | -- |
| 137.57 | 0.546 | 9.92 | 0.625 | 1.9 | -3.11 | -1.3 | -- | -0.466 | 14.4 | 28.08 | 373 | 19.9 | -- |
| 146.13 | 0.563 | 9.97 | 0.447 | 1.91 | -2.66 | -- | 1.09 | -0.539 | 14.6 | 27.37 | 508 | 20.9 | -- |
| 143.09 | 0.557 | 9.92 | 0.629 | 1.89 | -2.98 | -- | -- | -0.463 | 14.2 | 28.62 | 379 | 20.3 | -- |
| 198.93 | 0.66 | 9.91 | 0.747 | -- | -2.31 | -- | 1.11 | -0.351 | -- | 33 | 8 | 0.264 | -- |
| 206.08 | 0.673 | 9.86 | 1.09 | 1.53 | -- | -1.02 | -- | -0.0813 | 16.2 | -- | -- | -- | -- |
| 208.99 | 0.677 | 9.86 | 1.07 | 1.52 | -- | -- | -- | -0.087 | 16.1 | -- | -- | -- | -- |
| 201.08 | 0.66 | 9.9 | 0.83 | -- | -2.29 | -- | -- | -0.328 | -- | 33.19 | 4 | 0.319 | -- |
| 151.73 | 0.574 | 9.94 | -- | 1.93 | -3.32 | -- | -- | -0.555 | 14.2 | 27.84 | 408 | 20.1 | -- |
| 335.23 | 0.856 | 9.85 | 1.01 | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
| 239.43 | 0.724 | 9.89 | -- | 1.5 | -- | -- | -- | -0.207 | 16.1 | -- | -- | -- | -- |
| 215.76 | 0.686 | 9.94 | -- | -- | -2.5 | -- | -- | -0.512 | -- | 30.1 | 7 | 23.4 | -- |
| 362.3 | 0.888 | 9.88 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 8 | 129.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 13 | 131.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 21 | 132.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 24 | 133.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 46 | 134.21 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 82 | 136.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 111 | 137.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 126 | 138.06 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 10 |
| 147 | 138.89 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 165 | 139.35 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 181 | 139.98 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 12 |
| 194 | 140.43 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 206 | 140.75 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 209 | 140.88 | temperature | 15 | 270 | > th | dose dependent | sin | 2 | NA |
| 262 | 142.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 308 | 143.17 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 7 |
| 316 | 143.31 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 329 | 143.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 5 |
| 370 | 144.28 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 402 | 145.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 409 | 145.09 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 2 |
| 412 | 145.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 423 | 145.47 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 4 |
| 459 | 145.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 496 | 146.51 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 9 |
| 509 | 146.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 522 | 146.85 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 7 |
| 534 | 147.02 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 599 | 147.83 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 616 | 147.97 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 690 | 148.89 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 744 | 149.70 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 822 | 150.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 852 | 150.98 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 858 | 151.05 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 926 | 151.71 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |