Os11g0606400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0606400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.19 | 0.484 | 12 | -1.16 | 2.52 | 1.21 | -1.34 | -3.14 | -8.65 | 23.4 | 23.4 | 412 | 23.5 | -- |
| 118.22 | 0.506 | 12 | -0.527 | 2.63 | 1.28 | -0.623 | -- | -8.55 | 23.4 | 23.2 | 454 | 23.5 | -- |
| 110.98 | 0.491 | 12 | -1.02 | 2.45 | 1.2 | -- | -2.61 | -8.65 | 23.5 | 23.61 | 468 | 23.9 | -- |
| 118.42 | 0.507 | 11.9 | -0.464 | 2.56 | 1.18 | -- | -- | -8.46 | 23.6 | 23.23 | 447 | 23.2 | -- |
| 152.68 | 0.575 | 11.8 | -0.203 | -- | -1.93 | -- | 0.7 | -8.16 | -- | 11.22 | 799 | 0.879 | -- |
| 152.68 | 0.579 | 11.8 | -0.216 | 1.94 | -- | -0.7 | -- | -8.16 | 23.8 | -- | -- | -- | -- |
| 154.81 | 0.583 | 11.8 | -0.188 | 1.94 | -- | -- | -- | -8.15 | 23.8 | -- | -- | -- | -- |
| 154.81 | 0.579 | 11.8 | -0.188 | -- | -1.94 | -- | -- | -8.15 | -- | 11.45 | 815 | 0.999 | -- |
| 123.85 | 0.518 | 11.9 | -- | 2.53 | 1.14 | -- | -- | -8.4 | 23.5 | 23.23 | 446 | 23.4 | -- |
| 391.69 | 0.925 | 11.8 | -0.131 | -- | -- | -- | -- | -8.13 | -- | -- | -- | -- | -- |
| 155.74 | 0.584 | 11.8 | -- | 1.94 | -- | -- | -- | -8.13 | 23.8 | -- | -- | -- | -- |
| 155.74 | 0.581 | 11.8 | -- | -- | -1.93 | -- | -- | -8.13 | -- | 11.38 | 820 | 1.05 | -- |
| 392.15 | 0.924 | 11.8 | -- | -- | -- | -- | -- | -8.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 3 | 108.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 5 | 108.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 6 | 108.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 21 | 111.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 24 | 111.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 42 | 113.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 52 | 113.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 78 | 115.39 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 115 | 116.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 118 | 117.03 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 168 | 118.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 170 | 118.23 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 7 |
| 213 | 119.41 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 231 | 119.68 | temperature | 25 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 312 | 121.06 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 5 |
| 351 | 121.68 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 13 |
| 423 | 122.58 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 433 | 122.67 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 455 | 122.88 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 12 |
| 458 | 122.90 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 10 |
| 483 | 123.13 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 10 |
| 486 | 123.14 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 503 | 123.29 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 521 | 123.53 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 8 |
| 542 | 123.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 10 |
| 575 | 123.95 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 590 | 124.12 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 600 | 124.20 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 10 |
| 651 | 124.75 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 782 | 125.94 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 855 | 126.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 882 | 126.67 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 893 | 126.76 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 908 | 126.87 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 16 | 7 |
| 931 | 127.03 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 18 |