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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0606300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.67 (0.0425) R2 : 0.473
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.79 (0.127) R2dC : 0.326 R2C : -0.0151
β3 : 1.87 (0.158) R2dE : 0.254 R2E : 0.0271
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.832 (0.0935) R2dN8 : 0.135 R2N8 : 0.193
σ : 0.784
deviance : 283.18
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_____
C
peak time of C : 16
E
wheather : temperature
threshold : 20.05
memory length : 155
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.47
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270.69 0.773 4.75 -0.914 1.83 2.25 0.43 -2.84 0.613 16.3 20.17 133 2.1 --
277.87 0.776 4.7 -0.438 1.92 2.16 0.836 -- 0.758 16.5 19.34 154 2.1 --
271.06 0.767 4.74 -0.903 1.83 2.15 -- -2.71 0.624 16.2 20.16 150 2.31 --
279.2 0.778 4.69 -0.395 1.82 1.99 -- -- 0.772 16.1 20.06 154 2.41 --
342.47 0.862 4.7 -0.628 -- 2.23 -- -3.26 0.716 -- 24.3 234 2.25 --
355.69 0.884 4.56 -0.0139 1.05 -- -0.267 -- 1.21 14.1 -- -- -- --
355.94 0.883 4.56 -0.0215 1.05 -- -- -- 1.21 14.1 -- -- -- --
344.41 0.864 4.63 -0.286 -- 2.08 -- -- 0.91 -- 24.2 226 1.65 --
283.18 0.784 4.67 -- 1.79 1.87 -- -- 0.832 16 20.05 155 2.47 --
422.36 0.96 4.57 -0.0656 -- -- -- -- 1.18 -- -- -- -- --
355.95 0.883 4.56 -- 1.05 -- -- -- 1.21 14.1 -- -- -- --
346.68 0.867 4.63 -- -- 2.06 -- -- 0.946 -- 24.2 221 1.45 --
422.47 0.959 4.57 -- -- -- -- -- 1.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.17 temperature 15 270 > th dose dependent rect. 19 16
2 262.97 temperature 30 90 < th dose dependent rect. 12 21
6 263.86 temperature 15 270 > th dose dependent rect. 17 19
35 268.14 temperature 15 10 > th dose dependent rect. 9 19
88 271.81 temperature 10 270 > th dose dependent rect. 6 19
100 272.75 temperature 20 90 > th dose dependent sin 8 NA
102 273.16 temperature 15 10 > th dose dependent rect. 6 23
124 274.59 temperature 30 270 < th dose dependent rect. 22 9
142 275.79 temperature 15 10 > th dose dependent rect. 9 16
161 276.98 temperature 30 90 < th dose dependent sin 7 NA
167 277.51 temperature 10 90 > th dose dependent sin 7 NA
246 280.15 temperature 25 270 < th dose independent rect. 11 21
328 282.93 temperature 15 10 > th dose dependent rect. 8 23
334 283.08 temperature 10 270 > th dose dependent rect. 17 9
341 283.25 temperature 25 90 < th dose dependent rect. 1 22
398 285.14 temperature 30 10 < th dose dependent rect. 1 23
419 285.66 temperature 25 270 > th dose independent rect. 17 19
485 287.14 radiation 10 43200 < th dose dependent rect. 20 8
526 287.89 temperature 30 270 < th dose dependent rect. 1 6
648 290.25 temperature 25 90 < th dose dependent rect. 1 20
684 290.76 temperature 20 90 > th dose independent rect. 21 15
753 291.78 temperature 20 10 > th dose independent rect. 9 19
761 291.89 temperature 30 90 < th dose dependent rect. 1 18
764 291.94 humidity 80 43200 < th dose dependent rect. 7 2
813 292.50 temperature 10 270 > th dose dependent rect. 6 6
820 292.59 temperature 30 10 < th dose dependent no NA NA
821 292.62 wind 9 14400 > th dose independent rect. 3 10
847 292.91 temperature 30 10 < th dose dependent rect. 21 23
867 293.24 temperature 20 270 > th dose independent rect. 6 20
875 293.37 temperature 30 30 < th dose dependent rect. 15 23
893 293.65 temperature 30 90 < th dose dependent rect. 19 23
896 293.70 temperature 10 30 > th dose dependent rect. 9 3
900 293.74 temperature 25 4320 < th dose dependent rect. 21 1
904 293.81 temperature 15 10 > th dose dependent no NA NA
910 293.90 temperature 30 90 < th dose dependent rect. 3 16
939 294.20 wind 9 14400 < th dose independent rect. 2 11
946 294.27 temperature 30 30 < th dose dependent rect. 3 23