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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0605900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.0416) R2 : 0.279
β1 : 0.968 (0.152) R2dD : 0.0663 R2D : 0.0569
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.908 (0.0888) R2dN8 : 0.222 R2N8 : 0.212
σ : 0.78
deviance : 278.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
246.94 0.738 4.2 0.881 0.475 -2.1 0.856 -5.16 -0.892 16.5 1015 1491 -- --
257.07 0.747 4.17 1.03 0.452 -0.796 0.997 -- -0.888 16.2 1014 1783 -- --
248.72 0.735 4.2 0.873 0.471 -1.93 -- -4.88 -0.891 16.6 1015 1472 -- --
260.39 0.752 4.18 1.04 0.453 -0.742 -- -- -0.869 16.3 1013 1776 -- --
260.81 0.752 4.19 0.852 -- -2.04 -- -5.06 -0.901 -- 1015 1472 -- --
261.65 0.758 4.19 0.979 0.501 -- 1.12 -- -0.9 16.5 -- -- -- --
264.99 0.762 4.19 0.987 0.51 -- -- -- -0.894 16.6 -- -- -- --
272.67 0.769 4.18 1.02 -- -0.938 -- -- -0.869 -- 1014 1795 -- --
287.06 0.789 4.2 -- 0.469 -0.636 -- -- -0.942 16.4 1014 1869 -- --
278.86 0.78 4.18 0.968 -- -- -- -- -0.908 -- -- -- -- --
290.69 0.798 4.21 -- 0.492 -- -- -- -1 16.7 -- -- -- --
297.65 0.804 4.2 -- -- -0.686 -- -- -0.978 -- 1014 2554 -- --
303.56 0.813 4.21 -- -- -- -- -- -1.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 245.24 atmosphere 1015 1440 < th dose independent rect. 14 7
2 245.42 atmosphere 1015 1440 < th dose independent rect. 15 5
5 246.08 radiation 10 720 < th dose dependent rect. 10 2
6 246.31 atmosphere 1015 1440 > th dose independent rect. 14 7
26 247.37 atmosphere 1015 1440 > th dose independent rect. 16 5
34 247.50 radiation 20 720 < th dose independent rect. 10 2
53 247.80 atmosphere 1015 1440 < th dose independent rect. 14 19
58 247.81 atmosphere 1015 1440 < th dose independent rect. 14 16
75 247.90 atmosphere 1015 1440 < th dose independent sin 17 NA
104 248.29 atmosphere 1010 1440 > th dose dependent rect. 22 1
107 248.36 wind 9 30 > th dose dependent rect. 18 18
113 248.42 radiation 20 90 < th dose dependent rect. 8 6
116 248.46 atmosphere 1010 1440 > th dose dependent rect. 18 7
119 248.52 atmosphere 1010 1440 > th dose dependent rect. 18 1
121 248.55 atmosphere 1010 1440 > th dose dependent rect. 14 13
125 248.58 radiation 20 720 < th dose independent rect. 16 20
131 248.63 radiation 20 720 < th dose independent rect. 16 22
152 248.74 atmosphere 1015 1440 < th dose independent rect. 8 15
154 248.75 atmosphere 1015 1440 < th dose independent rect. 5 18
188 248.89 radiation 10 90 < th dose dependent rect. 5 23
192 248.92 wind 9 30 > th dose dependent sin 7 NA
199 248.95 atmosphere 1010 1440 > th dose dependent sin 15 NA
201 248.96 radiation 20 10 < th dose dependent rect. 9 6
270 249.15 atmosphere 1015 1440 < th dose independent rect. 8 22
284 249.17 atmosphere 1015 1440 < th dose independent no NA NA
300 249.18 atmosphere 1015 1440 < th dose independent rect. 19 23
308 249.19 atmosphere 1015 1440 < th dose independent rect. 16 23
328 249.22 radiation 30 720 < th dose dependent rect. 16 22
343 249.26 atmosphere 1015 1440 > th dose independent rect. 14 1
350 249.26 atmosphere 1015 1440 > th dose dependent rect. 14 1
358 249.27 wind 9 30 > th dose dependent rect. 21 15
399 249.35 atmosphere 1005 1440 > th dose dependent rect. 14 1
413 249.38 wind 1 43200 < th dose independent rect. 3 1
414 249.38 radiation 30 1440 > th dose independent rect. 14 1
434 249.45 radiation 20 720 < th dose independent rect. 8 6
436 249.47 wind 1 43200 > th dose independent rect. 3 1
460 249.53 radiation 30 4320 > th dose independent rect. 9 1
466 249.56 humidity 90 10 < th dose independent rect. 4 21
471 249.57 radiation 10 90 < th dose dependent rect. 16 22
472 249.58 radiation 30 1440 < th dose independent rect. 14 1
478 249.61 radiation 10 10 < th dose independent rect. 12 1
482 249.62 atmosphere 1015 1440 > th dose independent sin 17 NA
484 249.62 humidity 80 10 > th dose dependent sin 23 NA
487 249.64 wind 1 43200 < th dose independent rect. 1 4
497 249.68 radiation 20 720 < th dose independent rect. 8 20
500 249.68 humidity 80 30 > th dose dependent rect. 5 23
502 249.69 wind 1 43200 < th dose dependent rect. 1 4
508 249.70 radiation 40 720 < th dose dependent rect. 9 19
511 249.71 atmosphere 1010 720 > th dose dependent rect. 2 1
513 249.72 radiation 20 720 < th dose independent rect. 1 19
518 249.76 wind 1 43200 < th dose independent rect. 3 3
531 249.81 wind 1 43200 > th dose independent rect. 1 4
536 249.82 wind 9 30 > th dose dependent rect. 1 11
547 249.84 wind 9 30 > th dose dependent rect. 11 1
551 249.85 radiation 30 1440 > th dose independent rect. 14 18
554 249.86 radiation 40 720 < th dose dependent rect. 2 18
561 249.88 radiation 40 1440 > th dose independent rect. 14 20
569 249.90 radiation 20 720 < th dose independent rect. 23 21
577 249.91 humidity 80 30 > th dose dependent rect. 17 22
648 249.98 wind 1 43200 < th dose dependent rect. 3 1
649 249.98 radiation 40 720 < th dose dependent rect. 23 21
680 250.03 radiation 20 720 < th dose independent rect. 13 23
687 250.04 wind 1 43200 < th dose dependent rect. 3 3
718 250.10 radiation 20 720 < th dose independent rect. 23 15
723 250.11 radiation 30 720 < th dose dependent rect. 23 15
732 250.13 radiation 10 90 < th dose independent rect. 9 5
741 250.15 radiation 40 720 < th dose dependent rect. 5 23
775 250.19 radiation 20 720 < th dose independent rect. 8 12
776 250.19 radiation 20 720 < th dose independent rect. 1 13
777 250.19 radiation 20 720 < th dose independent rect. 5 23
779 250.19 humidity 80 30 > th dose dependent rect. 5 14
781 250.20 atmosphere 1010 4320 > th dose independent rect. 7 1
801 250.24 radiation 30 1440 > th dose dependent rect. 14 20
815 250.27 radiation 40 720 < th dose dependent rect. 9 11
856 250.33 radiation 20 720 > th dose independent rect. 13 23
863 250.34 radiation 30 1440 > th dose dependent rect. 14 1
881 250.37 radiation 20 720 < th dose independent rect. 1 11
902 250.40 radiation 30 720 < th dose dependent rect. 1 13
906 250.41 radiation 20 720 > th dose independent rect. 6 9
934 250.43 radiation 20 720 > th dose independent sin 4 NA
944 250.45 atmosphere 1010 4320 < th dose independent rect. 6 1
977 250.49 humidity 90 10 < th dose independent rect. 4 15
981 250.50 radiation 30 1440 > th dose independent sin 13 NA