Os11g0605800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os11g0605800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.7 | 0.273 | 9.85 | 0.00678 | 0.523 | 1.06 | 0.0487 | 1.08 | -1.29 | 22.3 | 21.8 | 1340 | -- | -- |
| 36.09 | 0.28 | 9.88 | -0.203 | 0.486 | 0.96 | 0.0704 | -- | -1.36 | 22.3 | 22.05 | 1252 | -- | -- |
| 33.71 | 0.27 | 9.85 | 0.0065 | 0.522 | 1.06 | -- | 1.08 | -1.29 | 22.3 | 21.79 | 1337 | -- | -- |
| 35.99 | 0.279 | 9.88 | -0.218 | 0.463 | 0.923 | -- | -- | -1.36 | 22.1 | 22.1 | 1154 | -- | -- |
| 44.6 | 0.311 | 9.85 | 0.0712 | -- | 1.04 | -- | 0.939 | -1.3 | -- | 21.9 | 922 | -- | -- |
| 69.24 | 0.39 | 9.82 | 0.108 | 0.56 | -- | 0.0629 | -- | -1.06 | 22.6 | -- | -- | -- | -- |
| 69.26 | 0.39 | 9.82 | 0.105 | 0.559 | -- | -- | -- | -1.06 | 22.6 | -- | -- | -- | -- |
| 46.09 | 0.316 | 9.88 | -0.208 | -- | 0.967 | -- | -- | -1.38 | -- | 22.2 | 909 | -- | -- |
| 37.1 | 0.284 | 9.88 | -- | 0.463 | 0.867 | -- | -- | -1.33 | 22.1 | 22.2 | 1153 | -- | -- |
| 88.51 | 0.44 | 9.8 | 0.116 | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
| 69.55 | 0.39 | 9.82 | -- | 0.56 | -- | -- | -- | -1.07 | 22.6 | -- | -- | -- | -- |
| 47.14 | 0.32 | 9.87 | -- | -- | 0.928 | -- | -- | -1.35 | -- | 22.2 | 904 | -- | -- |
| 88.86 | 0.44 | 9.81 | -- | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 41 | 36.06 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 52 | 36.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 16 |
| 95 | 36.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 117 | 36.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 157 | 36.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 165 | 36.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 195 | 36.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 197 | 36.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 205 | 36.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 231 | 37.01 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 239 | 37.02 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 255 | 37.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 496 | 37.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 830 | 38.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 875 | 39.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 901 | 39.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 902 | 39.24 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 906 | 39.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 907 | 39.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 917 | 39.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 927 | 39.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 942 | 39.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 991 | 39.54 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |