Os11g0605100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0605100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 367.28 | 0.9 | 10.2 | -2.07 | 5.17 | 3.45 | 0.738 | -1.08 | -7.41 | 22.5 | 16.5 | 497 | 0.000844 | -- |
| 367.99 | 0.893 | 10.2 | -1.91 | 5.26 | 3.55 | 1.09 | -- | -7.37 | 22.5 | 16.2 | 496 | 9.99e-07 | -- |
| 369 | 0.895 | 10.2 | -2.13 | 5.12 | 3.4 | -- | -1.5 | -7.39 | 22.5 | 16.4 | 505 | 0.0228 | -- |
| 372.81 | 0.899 | 10.2 | -1.92 | 5.06 | 3.33 | -- | -- | -7.36 | 22.6 | 16.52 | 516 | 0.000402 | -- |
| 1022.14 | 1.49 | 10.1 | -2.08 | -- | 2.81 | -- | -0.975 | -7.23 | -- | 24.52 | 1008 | 0.000702 | -- |
| 508.87 | 1.06 | 10.1 | -1.22 | 3.43 | -- | 0.634 | -- | -6.82 | 22.1 | -- | -- | -- | -- |
| 510.45 | 1.06 | 10.1 | -1.24 | 3.43 | -- | -- | -- | -6.82 | 22.1 | -- | -- | -- | -- |
| 1015.84 | 1.48 | 10.1 | -1.9 | -- | 2.63 | -- | -- | -7.16 | -- | 24.5 | 1005 | 2.28e-05 | -- |
| 462.86 | 1 | 10.2 | -- | 4.74 | 2.58 | -- | -- | -7.05 | 22.4 | 16.8 | 478 | 4.49e-06 | -- |
| 1222.91 | 1.63 | 9.97 | -1.2 | -- | -- | -- | -- | -6.82 | -- | -- | -- | -- | -- |
| 551.24 | 1.1 | 10 | -- | 3.42 | -- | -- | -- | -6.69 | 22.1 | -- | -- | -- | -- |
| 1052.91 | 1.52 | 9.86 | -- | -- | -2.61 | -- | -- | -6.35 | -- | 16.8 | 478 | 4.49e-06 | -- |
| 1260.68 | 1.66 | 9.94 | -- | -- | -- | -- | -- | -6.69 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 362.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 2 | 364.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 5 | 369.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 23 | 374.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 32 | 376.10 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 63 | 379.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 83 | 381.08 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 6 |
| 102 | 382.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 127 | 384.28 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 134 | 384.78 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 179 | 387.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 3 |
| 196 | 388.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 206 | 388.59 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 215 | 389.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 262 | 391.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 293 | 393.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 362 | 396.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 456 | 400.10 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 462 | 400.15 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 468 | 400.39 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 479 | 400.98 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 488 | 401.24 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 509 | 401.86 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 512 | 401.95 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 546 | 402.79 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 11 | 12 |
| 561 | 403.18 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 572 | 403.48 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 16 |
| 579 | 403.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 606 | 404.56 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 671 | 406.15 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 691 | 406.58 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 2 |
| 769 | 408.59 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 779 | 408.87 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 866 | 410.40 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 18 | NA |
| 903 | 411.27 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 919 | 411.57 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 936 | 411.88 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 977 | 412.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |