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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0604400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0224) R2 : 0.0348
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.191 (0.0471) R2dN8 : 0.0449 R2N8 : 0.0348
σ : 0.421
deviance : 81.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.18 0.413 2.97 0.225 0.103 2.72 0.144 5.53 0.228 17 19.33 189 -- --
80.07 0.42 2.93 0.182 0.0695 0.394 -0.0349 -- 0.225 17.9 19.33 189 -- --
76.39 0.407 2.98 0.294 0.0745 3.7 -- 7.34 0.244 19.5 18.93 236 -- --
79.87 0.416 2.92 0.197 0.0853 0.325 -- -- 0.241 17.8 21.91 247 -- --
76.26 0.407 3 0.249 -- 4.93 -- 10.4 0.179 -- 18.74 225 -- --
80.83 0.421 2.93 0.128 0.0672 -- -0.0504 -- 0.207 18.9 -- -- -- --
80.84 0.421 2.93 0.129 0.0671 -- -- -- 0.207 18.8 -- -- -- --
80.24 0.417 2.92 0.19 -- 0.307 -- -- 0.235 -- 21.63 243 -- --
80.78 0.421 2.93 -- 0.0704 0.213 -- -- 0.21 17.6 21.91 247 -- --
81.07 0.421 2.93 0.128 -- -- -- -- 0.205 -- -- -- -- --
81.28 0.422 2.93 -- 0.0656 -- -- -- 0.192 19 -- -- -- --
81.02 0.421 2.93 -- -- 0.209 -- -- 0.207 -- 21.63 243 -- --
81.5 0.421 2.93 -- -- -- -- -- 0.191 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.24 humidity 70.0 30 < th dose independent rect. 19 1
24 73.64 humidity 70.0 30 < th dose dependent rect. 19 1
36 73.91 humidity 70.0 30 < th dose independent rect. 10 1
37 73.92 wind 1.0 30 < th dose independent rect. 10 1
38 73.92 temperature 10.0 1440 > th dose independent rect. 11 1
42 73.92 atmosphere 995.0 1440 > th dose independent rect. 11 1
45 73.92 precipitation 0.1 1440 < th dose independent rect. 11 1
46 73.92 temperature 10.0 1440 > th dose independent rect. 12 23
49 73.92 wind 1.0 30 < th dose dependent rect. 10 1
50 73.92 precipitation 0.1 1440 < th dose dependent rect. 11 1
62 74.01 temperature 25.0 30 > th dose dependent rect. 10 1
63 74.01 atmosphere 1005.0 30 > th dose dependent rect. 10 1
65 74.03 humidity 80.0 30 < th dose dependent rect. 10 1
66 74.04 atmosphere 1005.0 30 > th dose independent rect. 10 1
86 74.17 temperature 25.0 30 > th dose independent rect. 10 1
89 74.20 radiation 10.0 30 > th dose independent rect. 10 1
90 74.22 temperature 30.0 30 < th dose independent rect. 10 1
92 74.23 radiation 1.0 30 > th dose dependent rect. 10 1
93 74.24 wind 5.0 30 < th dose independent rect. 10 1
96 74.25 temperature 10.0 30 > th dose independent rect. 10 1
98 74.25 humidity 50.0 30 > th dose independent rect. 10 1
102 74.25 atmosphere 1015.0 30 < th dose independent rect. 10 1
104 74.25 precipitation 0.1 30 < th dose independent rect. 10 1
105 74.25 temperature 10.0 30 > th dose independent rect. 11 23
106 74.25 precipitation 0.1 30 < th dose dependent rect. 10 1
107 74.26 wind 1.0 30 > th dose independent rect. 10 1
109 74.27 wind 9.0 30 < th dose dependent rect. 10 1
129 74.35 atmosphere 1015.0 30 < th dose independent rect. 11 23
130 74.36 radiation 40.0 30 < th dose independent rect. 10 1
131 74.42 wind 1.0 30 > th dose dependent rect. 10 1
148 74.58 radiation 40.0 30 < th dose dependent rect. 10 1
153 74.70 atmosphere 1015.0 30 < th dose dependent rect. 10 1
154 74.73 humidity 50.0 30 > th dose dependent rect. 10 1
158 74.79 temperature 30.0 90 > th dose independent rect. 18 1
183 75.11 temperature 30.0 90 > th dose dependent rect. 18 1
199 75.16 atmosphere 995.0 30 > th dose independent rect. 11 23
200 75.20 precipitation 0.1 30 < th dose independent rect. 11 23
202 75.20 precipitation 0.1 30 < th dose dependent rect. 11 23
264 75.93 wind 9.0 30 < th dose independent rect. 11 23
267 76.10 humidity 70.0 90 < th dose independent rect. 18 17
287 76.53 atmosphere 1000.0 1440 < th dose dependent rect. 9 2
290 76.55 humidity 80.0 4320 < th dose independent rect. 3 1
291 76.55 humidity 80.0 4320 > th dose independent rect. 3 2
293 76.55 humidity 80.0 4320 < th dose dependent rect. 4 1
298 76.57 atmosphere 1000.0 1440 > th dose independent rect. 8 2
299 76.58 atmosphere 1000.0 1440 < th dose independent rect. 8 1
304 76.59 humidity 50.0 10 > th dose independent rect. 11 23
313 76.68 humidity 80.0 4320 < th dose independent rect. 3 5
320 76.74 humidity 80.0 4320 > th dose independent rect. 3 5
338 76.88 atmosphere 1015.0 270 < th dose independent rect. 20 11
342 76.89 humidity 80.0 90 < th dose dependent rect. 18 17
357 76.93 humidity 80.0 4320 < th dose independent rect. 24 8
362 76.96 humidity 80.0 4320 > th dose independent rect. 24 8
371 77.03 radiation 40.0 90 > th dose independent rect. 14 21
380 77.08 atmosphere 1015.0 270 < th dose independent rect. 8 23
408 77.13 wind 1.0 720 < th dose independent rect. 19 2
415 77.15 wind 1.0 720 < th dose dependent rect. 20 1
424 77.19 humidity 80.0 4320 < th dose dependent rect. 24 8
465 77.33 atmosphere 1015.0 720 < th dose independent rect. 11 12
473 77.36 radiation 20.0 90 > th dose independent rect. 6 5
488 77.37 temperature 10.0 270 > th dose dependent rect. 20 11
496 77.38 temperature 25.0 30 > th dose dependent rect. 19 16
510 77.42 temperature 20.0 720 > th dose independent rect. 20 3
540 77.47 atmosphere 1015.0 720 < th dose independent rect. 19 4
560 77.51 wind 9.0 43200 < th dose independent rect. 7 1
563 77.51 atmosphere 1015.0 90 < th dose independent rect. 11 20
567 77.52 temperature 10.0 30 > th dose dependent rect. 11 23
574 77.54 temperature 30.0 30 < th dose independent rect. 11 23
579 77.55 radiation 1.0 90 > th dose dependent rect. 7 4
586 77.56 temperature 15.0 10 > th dose dependent rect. 23 9
596 77.58 atmosphere 1015.0 720 < th dose independent rect. 17 6
607 77.60 atmosphere 1010.0 90 < th dose independent rect. 11 14
608 77.60 atmosphere 1015.0 10 < th dose independent rect. 3 23
617 77.65 humidity 70.0 30 > th dose independent sin 10 NA
621 77.65 temperature 20.0 720 < th dose dependent rect. 21 1
653 77.68 wind 9.0 43200 > th dose dependent rect. 18 16
669 77.72 temperature 20.0 270 > th dose independent rect. 20 10
678 77.74 humidity 80.0 4320 < th dose independent sin 9 NA
681 77.74 wind 1.0 30 > th dose independent rect. 11 23
689 77.76 temperature 20.0 90 > th dose independent rect. 22 9
690 77.76 atmosphere 1015.0 720 < th dose independent rect. 3 20
701 77.77 humidity 50.0 270 > th dose independent rect. 9 22
714 77.78 humidity 90.0 90 < th dose dependent rect. 1 10
735 77.81 radiation 40.0 90 > th dose independent sin 11 NA
743 77.82 humidity 80.0 4320 > th dose independent rect. 24 1
748 77.83 humidity 80.0 4320 < th dose independent rect. 24 1
763 77.85 wind 9.0 43200 > th dose independent rect. 8 1
764 77.85 atmosphere 995.0 43200 < th dose independent rect. 7 1
776 77.85 wind 9.0 43200 > th dose dependent rect. 8 1
777 77.85 atmosphere 995.0 43200 < th dose dependent rect. 7 1
782 77.85 humidity 50.0 4320 < th dose dependent rect. 10 2
815 77.87 temperature 30.0 30 < th dose dependent rect. 10 1
864 77.89 atmosphere 1015.0 10 < th dose independent rect. 12 13
868 77.89 humidity 90.0 90 < th dose dependent rect. 7 4
872 77.90 humidity 70.0 90 < th dose independent sin 10 NA
874 77.90 atmosphere 995.0 43200 > th dose independent rect. 9 1
887 77.90 humidity 80.0 4320 < th dose dependent sin 10 NA
899 77.90 temperature 20.0 270 < th dose dependent rect. 19 10
901 77.90 temperature 20.0 270 < th dose dependent rect. 16 13
910 77.91 atmosphere 1015.0 720 < th dose independent rect. 9 14
913 77.91 humidity 80.0 4320 < th dose dependent rect. 24 1
960 77.94 temperature 20.0 90 > th dose independent rect. 11 20