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Os11g0602400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : tRNA intron endonuclease, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.85 (0.0289) R2 : 0.386
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.99 (0.14) R2dC : 1.1 R2C : -0.986
β3 : 1.86 (0.119) R2dE : 1.33 R2E : -0.763
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.311 (0.0609) R2dN8 : 0.044 R2N8 : 0.0438
σ : 0.542
deviance : 135.66
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_____
C
peak time of C : 13.5
E
wheather : radiation
threshold : 0.17
memory length : 18
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.41
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.23 0.544 6.86 -0.173 1.98 1.85 0.00373 0.41 -0.324 13.5 0.17 16 5.35 --
134.42 0.54 6.85 -0.153 1.99 1.86 -0.389 -- -0.297 13.5 0.17 16 5.36 --
134.11 0.539 6.85 -0.167 1.98 1.85 -- 0.461 -0.322 13.5 0.17 18 5.42 --
134.95 0.541 6.86 -0.168 1.99 1.86 -- -- -0.323 13.5 0.17 18 5.39 --
188.9 0.64 6.9 -0.252 -- 0.523 -- 0.921 -0.379 -- 0.1619 53 10.5 --
179.95 0.629 6.9 -0.256 0.718 -- 0.833 -- -0.372 18.9 -- -- -- --
181.67 0.631 6.9 -0.27 0.723 -- -- -- -0.369 18.7 -- -- -- --
185.36 0.634 6.95 -0.22 -- 1.38 -- -- -0.416 -- 54.95 413 15.4 --
135.66 0.542 6.85 -- 1.99 1.86 -- -- -0.311 13.5 0.17 18 5.41 --
208.95 0.675 6.89 -0.286 -- -- -- -- -0.384 -- -- -- -- --
183.59 0.634 6.9 -- 0.726 -- -- -- -0.339 18.7 -- -- -- --
177.51 0.621 6.86 -- -- 1.11 -- -- -0.273 -- 74.66 493 16 --
211.12 0.678 6.88 -- -- -- -- -- -0.352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 129.97 temperature 15.0 270 > th dose independent rect. 2 15
3 131.47 wind 9.0 270 < th dose independent rect. 6 8
4 131.62 temperature 10.0 270 > th dose independent rect. 6 8
5 131.62 atmosphere 995.0 270 > th dose independent rect. 6 8
6 131.62 atmosphere 1015.0 270 < th dose independent rect. 6 8
7 131.62 temperature 10.0 270 > th dose independent rect. 14 16
8 131.69 precipitation 0.1 270 < th dose independent rect. 2 15
9 131.69 precipitation 0.1 270 < th dose dependent rect. 2 15
10 131.72 precipitation 0.1 270 < th dose independent rect. 6 8
11 131.72 precipitation 0.1 270 < th dose dependent rect. 6 8
12 131.81 radiation 10.0 270 < th dose independent rect. 17 9
13 131.99 temperature 15.0 90 > th dose independent rect. 4 15
14 132.05 radiation 30.0 270 < th dose dependent rect. 17 9
15 132.06 wind 9.0 270 < th dose independent rect. 17 9
17 132.10 precipitation 0.1 270 < th dose independent rect. 14 16
19 132.10 precipitation 0.1 270 < th dose dependent rect. 14 16
20 132.33 humidity 50.0 270 > th dose independent rect. 17 9
21 132.52 temperature 10.0 270 > th dose independent rect. 17 9
26 132.52 atmosphere 1015.0 270 < th dose independent rect. 2 15
34 133.16 wind 9.0 270 < th dose independent rect. 14 16
37 133.49 precipitation 0.1 270 < th dose independent rect. 17 9
38 133.49 precipitation 0.1 270 < th dose dependent rect. 17 9
48 133.82 atmosphere 995.0 270 > th dose independent rect. 2 15
57 133.87 radiation 30.0 90 < th dose independent rect. 15 18
58 133.90 atmosphere 995.0 270 > th dose independent rect. 14 16
64 134.25 atmosphere 995.0 270 > th dose independent rect. 18 8
68 134.50 wind 9.0 270 < th dose independent rect. 2 15
71 134.67 temperature 10.0 270 > th dose dependent rect. 1 7
75 134.76 temperature 30.0 90 < th dose independent rect. 19 9
85 134.76 atmosphere 1015.0 90 < th dose independent rect. 4 15
98 134.97 radiation 40.0 270 < th dose independent rect. 14 16
102 135.11 humidity 50.0 270 > th dose independent rect. 6 7
104 135.17 temperature 25.0 270 < th dose independent rect. 4 1
117 135.46 humidity 90.0 270 > th dose independent rect. 4 1
133 135.79 radiation 1.0 90 > th dose independent rect. 8 7
135 135.88 wind 9.0 30 < th dose dependent rect. 4 5
143 136.14 radiation 20.0 270 < th dose independent rect. 1 7
154 136.21 wind 9.0 90 < th dose independent rect. 4 15
157 136.23 radiation 1.0 10 > th dose independent rect. 9 6
159 136.27 wind 9.0 270 < th dose independent rect. 8 17
163 136.36 humidity 70.0 270 > th dose independent rect. 1 7
171 136.46 radiation 1.0 270 < th dose dependent rect. 6 20
173 136.51 temperature 10.0 10 > th dose independent rect. 9 6
175 136.51 atmosphere 995.0 10 > th dose independent rect. 9 6
176 136.51 atmosphere 1015.0 10 < th dose independent rect. 9 6
177 136.51 precipitation 0.1 10 < th dose independent rect. 9 6
178 136.51 temperature 10.0 10 > th dose independent rect. 15 18
179 136.51 precipitation 0.1 10 < th dose dependent rect. 9 6
180 136.54 precipitation 0.1 270 < th dose independent rect. 1 7
181 136.54 temperature 10.0 30 > th dose dependent rect. 4 5
182 136.54 precipitation 0.1 270 < th dose dependent rect. 1 7
208 136.69 radiation 40.0 10 < th dose independent rect. 15 18
209 136.70 temperature 10.0 270 > th dose dependent rect. 2 5
213 136.75 wind 9.0 30 < th dose independent rect. 9 19
219 136.92 radiation 30.0 90 < th dose independent rect. 4 5
220 136.94 wind 9.0 30 < th dose independent rect. 4 5
221 136.94 temperature 10.0 30 > th dose independent rect. 4 5
223 136.94 temperature 30.0 30 < th dose independent rect. 4 5
224 136.94 humidity 50.0 30 > th dose independent rect. 4 5
226 136.94 atmosphere 995.0 30 > th dose independent rect. 4 5
227 136.94 atmosphere 1015.0 30 < th dose independent rect. 4 5
229 136.94 temperature 10.0 30 > th dose independent rect. 9 19
230 136.95 wind 9.0 270 < th dose independent rect. 6 20
234 136.97 precipitation 0.1 30 < th dose independent rect. 4 5
235 136.97 precipitation 0.1 30 < th dose dependent rect. 4 5
243 136.98 atmosphere 995.0 10 > th dose independent rect. 15 18
258 137.13 wind 9.0 270 < th dose dependent rect. 7 6
260 137.14 wind 7.0 270 < th dose independent rect. 1 7
262 137.14 temperature 10.0 270 > th dose dependent rect. 3 3
267 137.18 temperature 10.0 270 > th dose independent rect. 1 7
269 137.18 temperature 30.0 270 < th dose independent rect. 1 7
270 137.18 humidity 50.0 270 > th dose independent rect. 1 7
272 137.18 atmosphere 995.0 270 > th dose independent rect. 1 7
273 137.18 atmosphere 1015.0 270 < th dose independent rect. 1 7
274 137.18 temperature 10.0 270 > th dose independent rect. 8 17
275 137.24 radiation 40.0 10 < th dose dependent rect. 5 15
277 137.28 temperature 10.0 1440 > th dose independent rect. 10 6
280 137.28 temperature 10.0 1440 > th dose independent rect. 16 18
303 137.38 radiation 40.0 270 < th dose dependent rect. 1 7
304 137.40 humidity 50.0 270 > th dose dependent rect. 2 5
314 137.46 wind 1.0 270 > th dose independent rect. 6 7
315 137.47 radiation 40.0 90 < th dose independent rect. 4 15
332 137.57 radiation 1.0 270 > th dose independent rect. 6 8
333 137.57 precipitation 0.1 10 < th dose independent rect. 15 18
335 137.57 precipitation 0.1 10 < th dose dependent rect. 15 18
336 137.58 wind 9.0 10 < th dose independent rect. 9 6
347 137.69 humidity 50.0 270 > th dose dependent rect. 18 8
348 137.71 atmosphere 995.0 90 > th dose independent rect. 4 15
353 137.74 radiation 40.0 270 < th dose dependent rect. 2 5
356 137.76 precipitation 0.1 30 < th dose independent rect. 9 19
357 137.76 precipitation 0.1 30 < th dose dependent rect. 9 19
386 137.92 wind 9.0 270 < th dose dependent rect. 2 5
412 138.02 humidity 50.0 270 > th dose independent rect. 7 19
413 138.03 wind 9.0 270 < th dose dependent rect. 3 3
418 138.09 radiation 1.0 10 < th dose dependent sin 11 NA
437 138.30 humidity 50.0 90 > th dose dependent rect. 4 5
457 138.47 radiation 1.0 270 < th dose independent rect. 6 20
458 138.47 humidity 70.0 270 > th dose dependent rect. 4 1
497 138.57 wind 9.0 270 < th dose independent rect. 5 23
504 138.62 wind 9.0 270 < th dose dependent rect. 7 18
531 138.74 radiation 40.0 10 < th dose independent rect. 4 16
546 138.80 radiation 40.0 90 < th dose dependent rect. 4 15
547 138.81 precipitation 0.1 270 < th dose independent rect. 8 17
548 138.81 precipitation 0.1 270 < th dose dependent rect. 8 17
561 138.96 radiation 40.0 90 < th dose dependent rect. 4 5
564 138.99 humidity 50.0 270 > th dose independent rect. 8 17
571 139.01 radiation 20.0 30 < th dose independent rect. 4 16
573 139.03 wind 9.0 270 < th dose dependent rect. 4 1
601 139.18 wind 9.0 90 < th dose dependent rect. 19 9
606 139.22 atmosphere 1015.0 270 < th dose independent rect. 13 17
627 139.34 atmosphere 995.0 30 > th dose independent rect. 9 19
658 139.56 atmosphere 1015.0 10 < th dose independent rect. 15 18
659 139.58 precipitation 0.1 270 < th dose independent rect. 4 1
661 139.58 precipitation 0.1 270 < th dose dependent rect. 4 1
664 139.62 wind 9.0 90 < th dose dependent rect. 9 19
689 139.71 atmosphere 1010.0 90 < th dose independent rect. 15 18
704 139.77 wind 9.0 270 < th dose independent rect. 4 1
705 139.77 temperature 10.0 270 > th dose independent rect. 4 1
708 139.77 humidity 50.0 270 > th dose independent rect. 4 1
711 139.77 atmosphere 995.0 270 > th dose independent rect. 4 1
712 139.77 atmosphere 1010.0 270 < th dose independent rect. 4 1
714 139.77 radiation 20.0 270 < th dose independent rect. 4 1
718 139.77 temperature 10.0 270 > th dose independent rect. 5 23
722 139.80 radiation 40.0 270 < th dose dependent rect. 4 1
733 139.86 radiation 1.0 270 < th dose independent rect. 4 1
764 140.04 humidity 90.0 270 > th dose independent rect. 3 3
773 140.13 wind 1.0 10 > th dose independent rect. 9 6
822 140.29 radiation 40.0 10 < th dose dependent rect. 14 19
843 140.34 wind 9.0 270 < th dose dependent rect. 17 9
860 140.42 wind 1.0 270 > th dose independent rect. 13 17
911 140.59 radiation 40.0 90 < th dose dependent rect. 15 18
991 141.12 humidity 50.0 30 > th dose independent rect. 9 19