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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0600600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6 (0.0477) R2 : 0.735
β1 : 5.64 (0.18) R2dD : 0.627 R2D : 0.315
β2 : 0.983 (0.123) R2dC : 0.0368 R2C : -0.011
β3 : 1.77 (0.122) R2dE : 0.136 R2E : -0.0321
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.69 (0.102) R2dN8 : 0.212 R2N8 : 0.09
σ : 0.892
deviance : 366.8
__
_____
C
peak time of C : 4.44
E
wheather : temperature
threshold : 29.72
memory length : 1405
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
364.6 0.897 6.01 5.43 0.976 1.69 0.867 0.941 1.67 4.41 29.76 1401 -- --
364.99 0.89 6.01 5.64 0.973 1.79 0.853 -- 1.66 4.41 29.73 1405 -- --
366.61 0.892 6.01 5.45 0.979 1.69 -- 0.791 1.67 4.46 29.78 1405 -- --
366.8 0.892 6 5.64 0.983 1.77 -- -- 1.69 4.44 29.72 1405 -- --
394.79 0.925 5.96 5.49 -- 2.18 -- 0.785 1.93 -- 29.5 1815 -- --
538.11 1.09 5.95 5.03 0.814 -- 0.432 -- 1.84 4.97 -- -- -- --
538.59 1.09 5.95 5.03 0.817 -- -- -- 1.84 4.98 -- -- -- --
395.11 0.926 5.94 5.65 -- 2.27 -- -- 1.97 -- 29.47 1815 -- --
1160.62 1.59 6.09 -- 0.806 1.64 -- -- 1.28 4.03 32.2 1790 -- --
573.72 1.12 5.96 5.06 -- -- -- -- 1.86 -- -- -- -- --
1204.37 1.62 6.08 -- 0.908 -- -- -- 1.28 4.8 -- -- -- --
1194.59 1.61 6.14 -- -- 1.37 -- -- 1.08 -- 31.1 1855 -- --
1247.98 1.65 6.09 -- -- -- -- -- 1.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 353.75 wind 9.0 43200 > th dose dependent rect. 20 2
2 353.95 wind 9.0 43200 > th dose independent rect. 20 10
4 355.52 wind 9.0 43200 > th dose dependent rect. 20 10
5 355.73 wind 9.0 43200 < th dose independent rect. 20 10
7 356.94 wind 9.0 43200 > th dose independent rect. 17 14
11 358.46 wind 9.0 43200 < th dose independent rect. 17 15
14 359.00 atmosphere 1000.0 43200 > th dose independent rect. 11 1
15 359.03 atmosphere 1000.0 43200 < th dose independent rect. 11 1
16 359.45 wind 5.0 43200 < th dose independent rect. 17 15
17 359.61 wind 5.0 43200 > th dose independent rect. 17 15
19 359.66 wind 7.0 43200 > th dose dependent rect. 17 15
23 360.07 wind 9.0 43200 > th dose independent sin 12 NA
24 360.31 wind 5.0 43200 < th dose independent rect. 16 18
25 360.33 wind 5.0 43200 > th dose independent rect. 16 18
26 360.35 wind 5.0 43200 < th dose independent sin 12 NA
31 360.81 wind 5.0 43200 > th dose independent sin 12 NA
32 360.92 wind 9.0 43200 < th dose independent sin 12 NA
68 362.94 wind 5.0 43200 > th dose dependent sin 12 NA
76 363.10 temperature 25.0 1440 > th dose dependent rect. 18 1
84 363.38 wind 9.0 43200 > th dose dependent sin 13 NA
87 363.44 wind 5.0 43200 > th dose dependent rect. 16 19
92 363.56 wind 9.0 43200 > th dose independent rect. 20 4
156 365.29 precipitation 0.1 43200 > th dose dependent rect. 20 1
157 365.34 temperature 25.0 1440 > th dose dependent rect. 15 19
164 365.44 temperature 30.0 1440 < th dose independent rect. 10 14
165 365.44 temperature 25.0 1440 > th dose dependent rect. 13 21
167 365.45 temperature 30.0 1440 < th dose independent rect. 10 21
170 365.47 temperature 30.0 1440 < th dose independent rect. 10 9
174 365.49 temperature 30.0 1440 < th dose independent rect. 10 19
183 365.53 temperature 30.0 1440 < th dose independent rect. 10 17
246 366.26 temperature 30.0 1440 < th dose independent sin 18 NA
250 366.34 temperature 30.0 1440 > th dose independent rect. 11 8
288 366.53 wind 9.0 43200 > th dose dependent rect. 14 18
297 366.66 temperature 30.0 1440 > th dose dependent rect. 13 2
323 366.94 wind 5.0 43200 > th dose dependent rect. 20 1
332 366.99 atmosphere 1000.0 43200 < th dose dependent rect. 11 1
334 367.01 temperature 30.0 1440 > th dose independent sin 18 NA
362 367.21 radiation 20.0 1440 < th dose independent rect. 16 8
363 367.23 temperature 30.0 1440 > th dose dependent rect. 12 4
391 367.45 temperature 30.0 1440 < th dose independent rect. 2 21
393 367.46 temperature 30.0 1440 < th dose independent rect. 4 20
403 367.48 temperature 30.0 1440 < th dose independent rect. 2 17
408 367.49 temperature 30.0 1440 < th dose independent rect. 4 15
415 367.50 temperature 30.0 1440 < th dose independent rect. 6 17
428 367.52 temperature 30.0 1440 < th dose independent rect. 21 22
432 367.53 temperature 30.0 1440 < th dose independent rect. 6 13
445 367.54 temperature 30.0 1440 < th dose independent rect. 4 23
446 367.54 temperature 30.0 1440 < th dose independent rect. 6 23
450 367.55 temperature 30.0 1440 < th dose independent no NA NA
471 367.58 wind 5.0 43200 > th dose independent rect. 6 1
475 367.58 temperature 30.0 1440 < th dose independent rect. 6 21
494 367.61 temperature 30.0 1440 < th dose independent rect. 14 23
517 367.76 atmosphere 1000.0 43200 < th dose dependent rect. 15 1
518 367.76 atmosphere 1000.0 43200 < th dose dependent rect. 11 5
527 367.85 temperature 30.0 1440 < th dose independent rect. 18 23
530 367.87 temperature 25.0 4320 < th dose independent rect. 7 1
554 367.97 wind 9.0 43200 > th dose dependent rect. 20 4
556 367.99 temperature 25.0 1440 > th dose dependent sin 16 NA
559 368.01 radiation 20.0 1440 < th dose independent rect. 16 3
567 368.08 temperature 25.0 1440 > th dose dependent rect. 13 15
593 368.23 temperature 25.0 1440 > th dose dependent no NA NA
598 368.24 temperature 25.0 1440 > th dose dependent rect. 6 23
599 368.25 radiation 20.0 1440 < th dose independent rect. 16 13
600 368.25 temperature 25.0 1440 > th dose dependent rect. 22 23
606 368.30 temperature 25.0 1440 > th dose dependent rect. 2 23
656 368.47 temperature 25.0 1440 > th dose dependent rect. 15 10
660 368.48 temperature 30.0 1440 > th dose independent rect. 14 23
704 368.60 temperature 30.0 1440 > th dose independent rect. 15 3
711 368.62 temperature 30.0 1440 < th dose independent rect. 15 3
725 368.69 temperature 30.0 1440 > th dose independent no NA NA
820 368.71 temperature 30.0 1440 < th dose independent rect. 15 9
835 368.74 temperature 30.0 1440 < th dose independent rect. 15 16
839 368.75 temperature 30.0 1440 < th dose independent rect. 11 2
875 368.83 temperature 30.0 1440 < th dose independent rect. 15 14
926 368.94 temperature 30.0 1440 < th dose independent rect. 15 12
973 369.15 radiation 20.0 1440 > th dose dependent rect. 16 1