Os11g0599500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA helicase (Fragment).
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Os11g0599500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA helicase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.97 | 0.27 | 12.9 | 0.28 | 1.22 | -0.427 | -0.115 | 0.656 | 0.236 | 12.8 | 9.42 | 10 | -- | -- |
| 33.88 | 0.273 | 12.9 | 0.25 | 1.27 | -0.382 | -0.797 | -- | 0.227 | 12.7 | 9.42 | 10 | -- | -- |
| 32.99 | 0.268 | 12.9 | 0.276 | 1.21 | -0.43 | -- | 0.725 | 0.239 | 12.8 | 9.431 | 10 | -- | -- |
| 36.24 | 0.282 | 12.9 | 0.223 | 1.25 | -0.399 | -- | -- | 0.227 | 12.8 | 9.42 | 12 | -- | -- |
| 57.88 | 0.354 | 12.9 | 0.271 | -- | -1.22 | -- | 0.801 | 0.108 | -- | 8.26 | 45 | -- | -- |
| 38.87 | 0.292 | 12.9 | 0.226 | 1.67 | -- | -0.789 | -- | 0.204 | 12.6 | -- | -- | -- | -- |
| 41.53 | 0.302 | 12.9 | 0.196 | 1.67 | -- | -- | -- | 0.201 | 12.6 | -- | -- | -- | -- |
| 57.35 | 0.353 | 12.9 | 0.32 | -- | -1.22 | -- | -- | 0.156 | -- | 7.85 | 159 | -- | -- |
| 37.55 | 0.287 | 12.9 | -- | 1.26 | -0.388 | -- | -- | 0.202 | 12.8 | 9.42 | 12 | -- | -- |
| 215.85 | 0.687 | 12.9 | 0.137 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 42.54 | 0.305 | 12.9 | -- | 1.66 | -- | -- | -- | 0.179 | 12.6 | -- | -- | -- | -- |
| 56.14 | 0.349 | 12.9 | -- | -- | -1.31 | -- | -- | 0.147 | -- | 5.425 | 150 | -- | -- |
| 216.35 | 0.687 | 12.9 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.04 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 2 | 30.15 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 4 | 30.37 | radiation | 20.0 | 90 | < th | dose independent | rect. | 17 | 17 |
| 9 | 30.76 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 16 | 18 |
| 25 | 31.18 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 33 | 31.30 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 39 | 31.37 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 46 | 31.43 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 54 | 31.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 57 | 31.51 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 62 | 31.53 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 69 | 31.57 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 81 | 31.62 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 85 | 31.64 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 89 | 31.67 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 20 |
| 91 | 31.67 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 101 | 31.72 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 102 | 31.72 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 114 | 31.79 | radiation | 10.0 | 30 | < th | dose independent | sin | 21 | NA |
| 115 | 31.79 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 133 | 31.84 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 16 | 2 |
| 145 | 31.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 146 | 31.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 154 | 31.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 155 | 31.88 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 159 | 31.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 163 | 31.92 | radiation | 20.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 172 | 31.95 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 175 | 31.97 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 179 | 31.99 | humidity | 70.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 187 | 32.01 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 228 | 32.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 230 | 32.10 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 233 | 32.11 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 244 | 32.12 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 249 | 32.13 | radiation | 10.0 | 10 | < th | dose dependent | sin | 21 | NA |
| 280 | 32.17 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 283 | 32.18 | radiation | 10.0 | 10 | < th | dose independent | rect. | 24 | 22 |
| 291 | 32.19 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 20 |
| 301 | 32.21 | radiation | 30.0 | 30 | < th | dose independent | rect. | 2 | 9 |
| 303 | 32.21 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 305 | 32.22 | radiation | 1.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 306 | 32.22 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 332 | 32.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 334 | 32.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 347 | 32.27 | radiation | 10.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 362 | 32.32 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 17 | 5 |
| 364 | 32.32 | radiation | 10.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 383 | 32.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 414 | 32.40 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 421 | 32.41 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 10 |
| 432 | 32.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 470 | 32.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 487 | 32.47 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 510 | 32.50 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 519 | 32.52 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 16 |
| 523 | 32.53 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 525 | 32.53 | radiation | 10.0 | 30 | < th | dose independent | rect. | 12 | 10 |
| 546 | 32.55 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 547 | 32.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 9 |
| 551 | 32.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 15 |
| 554 | 32.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 555 | 32.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 15 |
| 561 | 32.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 562 | 32.56 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 567 | 32.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 573 | 32.58 | wind | 7.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 575 | 32.58 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 588 | 32.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 589 | 32.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 610 | 32.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 18 |
| 611 | 32.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 18 |
| 618 | 32.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 18 |
| 621 | 32.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 623 | 32.63 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 628 | 32.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 634 | 32.64 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 14 |
| 648 | 32.66 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 649 | 32.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 6 |
| 660 | 32.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 6 |
| 661 | 32.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 4 |
| 669 | 32.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 670 | 32.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 20 |
| 671 | 32.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 674 | 32.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 679 | 32.68 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 16 | 2 |
| 690 | 32.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 20 |
| 732 | 32.72 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 757 | 32.75 | humidity | 70.0 | 10 | > th | dose independent | rect. | 2 | 8 |
| 764 | 32.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 2 |
| 766 | 32.76 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 2 |
| 779 | 32.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 22 |
| 780 | 32.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 22 |
| 782 | 32.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 23 |
| 809 | 32.78 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 7 |
| 814 | 32.79 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 2 |
| 815 | 32.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 2 |
| 819 | 32.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 2 |
| 836 | 32.80 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 859 | 32.82 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 872 | 32.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 888 | 32.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 907 | 32.86 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 913 | 32.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 22 |
| 917 | 32.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 933 | 32.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 937 | 32.90 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 989 | 32.94 | wind | 1.0 | 10 | > th | dose independent | rect. | 17 | 5 |
| 996 | 32.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 17 |