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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0599000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0191) R2 : 0.0192
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.12 (0.0403) R2dN8 : 0.0248 R2N8 : 0.0192
σ : 0.36
deviance : 59.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.08 0.346 2.86 -0.203 0.105 7.68 -0.19 -19.6 0.137 19.4 49.25 36 -- --
58.38 0.359 2.79 0.0248 0.141 0.117 -0.15 -- 0.127 19.1 49.25 36 -- --
53.47 0.343 3.04 -0.633 0.118 35.6 -- -92.2 0.133 19.8 49 35 -- --
57.91 0.354 2.79 0.015 0.129 0.284 -- -- 0.137 19.9 55 31 -- --
54.22 0.345 3.04 -0.65 -- 36.4 -- -94.5 0.132 -- 49 35 -- --
58.42 0.358 2.79 0.03 0.141 -- -0.159 -- 0.127 19 -- -- -- --
58.48 0.358 2.79 0.0328 0.14 -- -- -- 0.126 19.3 -- -- -- --
58.83 0.357 2.79 0.014 -- 0.323 -- -- 0.133 -- 55.04 32 -- --
57.91 0.354 2.79 -- 0.131 0.314 -- -- 0.133 20 55 31 -- --
59.52 0.361 2.79 0.0303 -- -- -- -- 0.124 -- -- -- -- --
58.51 0.358 2.79 -- 0.14 -- -- -- 0.123 19.3 -- -- -- --
58.83 0.357 2.79 -- -- 0.327 -- -- 0.131 -- 55 32 -- --
59.55 0.36 2.79 -- -- -- -- -- 0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.96 humidity 60.0 10 < th dose independent rect. 16 1
2 46.07 humidity 60.0 10 < th dose dependent rect. 16 1
4 46.76 radiation 10.0 10 > th dose independent rect. 16 1
6 47.25 wind 5.0 10 < th dose independent rect. 16 1
8 47.30 temperature 30.0 10 > th dose dependent rect. 16 1
9 47.34 temperature 30.0 10 > th dose independent rect. 16 1
10 47.43 atmosphere 1005.0 10 < th dose independent rect. 16 1
13 48.98 radiation 10.0 10 > th dose dependent rect. 16 1
34 51.09 wind 7.0 10 < th dose dependent rect. 16 1
70 52.47 wind 3.0 10 > th dose independent rect. 16 1
73 52.59 radiation 20.0 10 < th dose independent rect. 16 1
75 52.70 atmosphere 1010.0 10 < th dose dependent rect. 16 1
88 53.29 atmosphere 1000.0 10 > th dose independent rect. 16 1
98 53.44 temperature 10.0 10 > th dose independent rect. 16 1
103 53.44 precipitation 0.1 10 < th dose independent rect. 16 1
104 53.44 temperature 10.0 10 > th dose independent rect. 17 23
105 53.44 precipitation 0.1 10 < th dose dependent rect. 16 1
135 53.80 humidity 50.0 30 < th dose independent rect. 13 4
210 54.13 wind 9.0 10 < th dose independent rect. 17 23
226 54.21 atmosphere 995.0 10 > th dose dependent rect. 16 1
229 54.27 humidity 50.0 30 > th dose independent rect. 21 23
230 54.46 radiation 40.0 10 < th dose dependent rect. 16 1
241 54.83 wind 1.0 10 > th dose dependent rect. 16 1
295 55.08 humidity 80.0 30 > th dose independent rect. 20 1
296 55.08 humidity 70.0 30 > th dose dependent rect. 20 1
297 55.09 wind 5.0 30 < th dose independent rect. 20 1
298 55.09 humidity 50.0 30 < th dose dependent sin 0 NA
300 55.09 humidity 50.0 30 > th dose dependent rect. 20 1
302 55.09 radiation 20.0 4320 < th dose dependent rect. 21 1
304 55.09 radiation 20.0 43200 < th dose dependent rect. 21 1
306 55.10 temperature 20.0 30 > th dose independent rect. 20 1
308 55.10 temperature 10.0 30 > th dose dependent rect. 20 1
315 55.11 wind 1.0 30 > th dose independent rect. 20 1
318 55.11 temperature 10.0 30 > th dose independent rect. 20 1
320 55.11 temperature 30.0 30 < th dose independent rect. 20 1
321 55.11 humidity 50.0 30 > th dose independent rect. 20 1
324 55.11 atmosphere 995.0 30 > th dose independent rect. 20 1
326 55.11 atmosphere 1010.0 30 < th dose independent rect. 20 1
328 55.11 radiation 1.0 30 < th dose independent rect. 20 1
333 55.11 precipitation 0.1 30 < th dose independent rect. 20 1
334 55.11 temperature 10.0 30 > th dose independent rect. 21 23
336 55.11 wind 7.0 30 < th dose dependent rect. 20 1
339 55.11 atmosphere 995.0 30 > th dose dependent rect. 20 1
340 55.11 atmosphere 1015.0 30 < th dose dependent rect. 20 1
341 55.11 radiation 1.0 30 < th dose dependent rect. 20 1
348 55.11 precipitation 0.1 30 < th dose dependent rect. 20 1
357 55.14 temperature 10.0 1440 > th dose independent rect. 21 1
360 55.14 temperature 30.0 1440 < th dose independent rect. 21 1
364 55.14 humidity 50.0 1440 > th dose independent rect. 21 1
370 55.14 atmosphere 995.0 1440 > th dose independent rect. 21 1
371 55.14 radiation 1.0 1440 < th dose independent rect. 21 1
391 55.14 temperature 10.0 1440 > th dose independent rect. 22 23
395 55.14 wind 1.0 30 > th dose dependent rect. 20 1
405 55.16 humidity 90.0 30 < th dose independent rect. 20 1
492 55.20 humidity 50.0 30 < th dose dependent no NA NA
653 55.25 temperature 30.0 30 < th dose dependent rect. 20 1
655 55.26 humidity 90.0 30 < th dose dependent rect. 20 1
695 55.41 temperature 25.0 10 > th dose dependent rect. 22 1
704 55.53 atmosphere 1000.0 30 > th dose independent rect. 21 23
713 55.68 precipitation 0.1 30 < th dose independent rect. 21 23
714 55.68 precipitation 0.1 30 < th dose dependent rect. 21 23
733 55.76 temperature 25.0 30 > th dose dependent rect. 20 3
763 55.87 atmosphere 1000.0 90 < th dose independent rect. 20 4
776 55.97 temperature 25.0 10 > th dose independent rect. 22 1
778 55.97 wind 9.0 30 < th dose independent rect. 21 23
782 56.01 humidity 90.0 30 < th dose dependent rect. 22 1
783 56.02 wind 1.0 30 > th dose dependent rect. 22 1
784 56.03 atmosphere 1015.0 30 < th dose dependent rect. 22 1
806 56.05 radiation 40.0 43200 < th dose dependent rect. 23 1
824 56.06 humidity 50.0 10 > th dose independent sin 12 NA
825 56.06 humidity 90.0 10 < th dose independent rect. 22 1
843 56.11 humidity 50.0 90 < th dose independent sin 6 NA
859 56.13 temperature 30.0 10 < th dose independent rect. 21 23
866 56.15 precipitation 0.1 30 < th dose independent rect. 22 1
867 56.15 precipitation 0.1 30 < th dose dependent rect. 22 1
871 56.17 wind 1.0 30 > th dose independent rect. 22 1
874 56.18 wind 7.0 30 < th dose independent rect. 22 1
876 56.18 temperature 10.0 30 > th dose independent rect. 22 1
878 56.18 temperature 30.0 30 < th dose independent rect. 22 1
879 56.18 humidity 50.0 30 > th dose independent rect. 22 1
882 56.18 atmosphere 995.0 30 > th dose independent rect. 22 1
883 56.18 atmosphere 1010.0 30 < th dose independent rect. 22 1
885 56.18 radiation 1.0 30 < th dose independent rect. 22 1
890 56.18 temperature 10.0 30 > th dose independent rect. 23 23
893 56.18 radiation 1.0 30 < th dose dependent rect. 22 1
902 56.19 atmosphere 1005.0 30 > th dose dependent rect. 18 3
919 56.21 wind 9.0 1440 < th dose independent rect. 23 1
920 56.21 temperature 10.0 1440 > th dose independent rect. 23 1
923 56.21 temperature 30.0 1440 < th dose independent rect. 23 1
927 56.21 humidity 50.0 1440 > th dose independent rect. 23 1
937 56.21 atmosphere 995.0 1440 > th dose independent rect. 23 1
938 56.21 radiation 1.0 1440 < th dose independent rect. 23 1
958 56.21 temperature 10.0 1440 > th dose independent rect. 24 23
962 56.21 radiation 1.0 1440 < th dose dependent rect. 23 1
970 56.22 humidity 50.0 30 > th dose independent rect. 13 23
973 56.23 humidity 50.0 30 > th dose dependent rect. 22 1
975 56.24 wind 9.0 30 < th dose dependent rect. 22 1