Os11g0592800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CDK5RAP1-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0592800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to CDK5RAP1-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.1 | 0.319 | 12 | -0.205 | 1.48 | 0.564 | -0.249 | -0.121 | -0.559 | 20.3 | 13.13 | 216 | -- | -- |
| 46.15 | 0.316 | 12 | -0.203 | 1.48 | 0.559 | -0.203 | -- | -0.558 | 20.3 | 13.14 | 213 | -- | -- |
| 46.28 | 0.317 | 12 | -0.196 | 1.49 | 0.567 | -- | -0.0487 | -0.559 | 20.3 | 12.76 | 213 | -- | -- |
| 46.27 | 0.317 | 12 | -0.199 | 1.48 | 0.562 | -- | -- | -0.558 | 20.3 | 13.14 | 213 | -- | -- |
| 58.69 | 0.357 | 12 | -0.291 | -- | 2.02 | -- | 0.267 | -0.73 | -- | 2.19 | 843 | -- | -- |
| 53.19 | 0.342 | 12 | -0.124 | 1.52 | -- | -0.325 | -- | -0.498 | 19.1 | -- | -- | -- | -- |
| 53.47 | 0.342 | 12 | -0.117 | 1.52 | -- | -- | -- | -0.499 | 19.1 | -- | -- | -- | -- |
| 57.27 | 0.352 | 12 | -0.225 | -- | 2.07 | -- | -- | -0.631 | -- | 2.153 | 845 | -- | -- |
| 47.28 | 0.32 | 12 | -- | 1.5 | 0.543 | -- | -- | -0.541 | 20.3 | 13.29 | 205 | -- | -- |
| 175.4 | 0.619 | 11.9 | -0.147 | -- | -- | -- | -- | -0.526 | -- | -- | -- | -- | -- |
| 53.83 | 0.343 | 12 | -- | 1.52 | -- | -- | -- | -0.486 | 19.1 | -- | -- | -- | -- |
| 58.3 | 0.356 | 11.9 | -- | -- | 2.06 | -- | -- | -0.579 | -- | 2.045 | 847 | -- | -- |
| 175.97 | 0.619 | 11.9 | -- | -- | -- | -- | -- | -0.51 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.36 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 3 | 38.92 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 23 | 39.57 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 21 |
| 25 | 39.57 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 26 | 39.61 | wind | 5.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 27 | 39.64 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 46 | 39.85 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 3 |
| 47 | 39.85 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 50 | 39.89 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 52 | 39.89 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 53 | 39.89 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 55 | 39.89 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 56 | 39.89 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 57 | 39.89 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 59 | 39.90 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 61 | 39.93 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 62 | 39.97 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 66 | 40.01 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 76 | 40.03 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 17 |
| 77 | 40.04 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 83 | 40.11 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 97 | 40.15 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 102 | 40.21 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 103 | 40.21 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 104 | 40.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 107 | 40.28 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 109 | 40.33 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 111 | 40.34 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 112 | 40.34 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 114 | 40.35 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 117 | 40.39 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 132 | 40.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 133 | 40.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 144 | 40.65 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 148 | 40.73 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 151 | 40.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 152 | 40.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 153 | 40.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 154 | 40.75 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 193 | 40.94 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 197 | 40.95 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 213 | 40.97 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 240 | 41.12 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 6 | 2 |
| 243 | 41.12 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 248 | 41.15 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 267 | 41.20 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 268 | 41.20 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 272 | 41.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 280 | 41.24 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 294 | 41.26 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 302 | 41.31 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 313 | 41.36 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 317 | 41.40 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 323 | 41.44 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 327 | 41.46 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 339 | 41.49 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 348 | 41.51 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 349 | 41.51 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 356 | 41.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 11 |
| 370 | 41.58 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 433 | 41.72 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 456 | 41.77 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 470 | 41.80 | wind | 5.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 510 | 41.84 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 523 | 41.89 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 527 | 41.90 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 536 | 41.93 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 537 | 41.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 540 | 41.93 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 542 | 41.93 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 543 | 41.93 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 544 | 41.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 569 | 42.02 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 591 | 42.09 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 596 | 42.10 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 10 |
| 608 | 42.13 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 624 | 42.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 646 | 42.21 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 8 |
| 647 | 42.21 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 661 | 42.24 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 666 | 42.26 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 688 | 42.27 | wind | 9.0 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 696 | 42.28 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 697 | 42.28 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 698 | 42.28 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 701 | 42.28 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 705 | 42.28 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 706 | 42.28 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 715 | 42.29 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 13 |
| 721 | 42.30 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 737 | 42.31 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 748 | 42.33 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 756 | 42.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 6 |
| 760 | 42.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 797 | 42.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 859 | 42.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 860 | 42.50 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 861 | 42.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 864 | 42.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 865 | 42.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 875 | 42.50 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 897 | 42.53 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 2 |
| 906 | 42.54 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 15 |
| 911 | 42.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 14 |
| 914 | 42.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 928 | 42.57 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 970 | 42.63 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 10 |
| 997 | 42.65 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 20 |