Os11g0592700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0592700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.21 | 0.254 | 13 | -0.219 | 1.02 | 0.711 | -0.503 | -0.458 | -0.404 | 20.2 | 21.1 | 63 | -- | -- |
| 29.39 | 0.252 | 13 | -0.138 | 1.02 | 0.669 | -0.475 | -- | -0.379 | 20.1 | 21.14 | 69 | -- | -- |
| 29.96 | 0.255 | 13 | -0.189 | 1.02 | 0.709 | -- | -0.358 | -0.4 | 20.2 | 21 | 62 | -- | -- |
| 30.08 | 0.255 | 13 | -0.126 | 1.03 | 0.685 | -- | -- | -0.382 | 20.2 | 21 | 54 | -- | -- |
| 59.5 | 0.359 | 13.1 | -0.729 | -- | 1.43 | -- | -3.02 | -0.577 | -- | 24.1 | 569 | -- | -- |
| 36.87 | 0.285 | 13 | 0.0112 | 1.11 | -- | -0.507 | -- | -0.264 | 19.3 | -- | -- | -- | -- |
| 37.57 | 0.287 | 13 | 0.022 | 1.11 | -- | -- | -- | -0.265 | 19.3 | -- | -- | -- | -- |
| 62.2 | 0.367 | 13 | -0.224 | -- | 1.17 | -- | -- | -0.408 | -- | 24.1 | 518 | -- | -- |
| 30.46 | 0.257 | 13 | -- | 1.03 | 0.644 | -- | -- | -0.361 | 20.1 | 21.07 | 54 | -- | -- |
| 102.91 | 0.474 | 13 | 0.00292 | -- | -- | -- | -- | -0.284 | -- | -- | -- | -- | -- |
| 37.58 | 0.287 | 13 | -- | 1.11 | -- | -- | -- | -0.268 | 19.3 | -- | -- | -- | -- |
| 63.43 | 0.371 | 13 | -- | -- | 1.15 | -- | -- | -0.376 | -- | 24.2 | 524 | -- | -- |
| 102.91 | 0.473 | 13 | -- | -- | -- | -- | -- | -0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 2 | 27.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 4 | 27.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 19 | 28.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 34 | 28.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 39 | 28.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 45 | 28.48 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 91 | 28.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 116 | 28.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 165 | 29.27 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 20 |
| 183 | 29.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 189 | 29.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 190 | 29.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 192 | 29.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 202 | 29.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 205 | 29.46 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 245 | 29.61 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 16 |
| 259 | 29.66 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 272 | 29.69 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 290 | 29.75 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 303 | 29.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 12 |
| 316 | 29.85 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 324 | 29.88 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 18 |
| 339 | 29.91 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 365 | 29.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 378 | 29.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 386 | 29.99 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 423 | 30.05 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 465 | 30.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 468 | 30.13 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 9 |
| 479 | 30.14 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 529 | 30.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 543 | 30.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 545 | 30.25 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 578 | 30.30 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 20 |
| 588 | 30.31 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 22 |
| 591 | 30.32 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 22 |
| 612 | 30.35 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 624 | 30.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 628 | 30.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 633 | 30.37 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 665 | 30.41 | humidity | 70 | 90 | > th | dose independent | rect. | 4 | 19 |
| 666 | 30.41 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 20 |
| 702 | 30.46 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 14 |
| 713 | 30.46 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 754 | 30.49 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 820 | 30.56 | radiation | 40 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 835 | 30.57 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 885 | 30.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 9 |
| 903 | 30.64 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 917 | 30.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 919 | 30.65 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 20 |
| 965 | 30.70 | humidity | 70 | 10 | > th | dose independent | rect. | 5 | 18 |
| 980 | 30.71 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |