Os11g0590700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0590700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.19 | 0.528 | 9.39 | -0.424 | 2.15 | -2.62 | -0.695 | -0.629 | 0.409 | 13.2 | 25.41 | 5384 | -- | -- |
| 126.5 | 0.524 | 9.41 | -0.495 | 2.15 | -2.46 | -0.699 | -- | 0.418 | 13.1 | 26.26 | 5370 | -- | -- |
| 128.09 | 0.527 | 9.39 | -0.41 | 2.15 | -2.72 | -- | -1 | 0.404 | 13.2 | 24.91 | 5386 | -- | -- |
| 128.48 | 0.528 | 9.41 | -0.516 | 2.15 | -2.47 | -- | -- | 0.4 | 13.2 | 26.53 | 5398 | -- | -- |
| 334.46 | 0.856 | 9.43 | -0.00224 | -- | -2.87 | -- | -0.0391 | 0.424 | -- | 24.91 | 5386 | -- | -- |
| 216.87 | 0.69 | 9.28 | 0.746 | 2.04 | -- | -0.728 | -- | 1.01 | 13.2 | -- | -- | -- | -- |
| 219.06 | 0.693 | 9.28 | 0.72 | 2.04 | -- | -- | -- | 1 | 13.2 | -- | -- | -- | -- |
| 248.09 | 0.737 | 9.46 | -0.113 | -- | -3.33 | -- | -- | 0.306 | -- | 28.84 | 6027 | -- | -- |
| 132.98 | 0.537 | 9.38 | -- | 2.16 | -2.13 | -- | -- | 0.539 | 13.1 | 28.42 | 5368 | -- | -- |
| 476.4 | 1.02 | 9.31 | 0.642 | -- | -- | -- | -- | 0.962 | -- | -- | -- | -- | -- |
| 232.73 | 0.714 | 9.3 | -- | 2.03 | -- | -- | -- | 0.923 | 13.1 | -- | -- | -- | -- |
| 240.22 | 0.724 | 9.44 | -- | -- | -3.5 | -- | -- | 0.393 | -- | 31.22 | 6040 | -- | -- |
| 487.27 | 1.03 | 9.33 | -- | -- | -- | -- | -- | 0.891 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 5 | 115.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 6 | 115.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 15 | 115.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 17 | 116.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 22 | 118.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 49 | 120.99 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 60 | 121.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 63 | 121.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 91 | 123.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 93 | 123.70 | radiation | 40 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 102 | 123.92 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 103 | 123.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 145 | 125.43 | radiation | 20 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 146 | 125.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 150 | 125.53 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 155 | 125.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 158 | 125.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 21 |
| 175 | 125.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 178 | 126.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 180 | 126.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 186 | 126.06 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 187 | 126.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 194 | 126.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 211 | 126.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 214 | 126.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 219 | 126.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 259 | 126.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 267 | 126.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 311 | 126.79 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 317 | 126.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 388 | 127.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 401 | 127.33 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 414 | 127.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 11 |
| 421 | 127.45 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 439 | 127.58 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 454 | 127.60 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 455 | 127.60 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 469 | 127.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 475 | 127.69 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 485 | 127.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 527 | 127.95 | humidity | 60 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 528 | 127.95 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 540 | 127.99 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 14 |
| 546 | 128.01 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 12 |
| 585 | 128.12 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 594 | 128.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 7 |
| 630 | 128.28 | humidity | 60 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 692 | 128.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 743 | 128.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 758 | 128.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 797 | 128.71 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 824 | 128.75 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 867 | 128.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 883 | 128.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 912 | 129.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 913 | 129.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 978 | 129.28 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |