Os11g0590400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0590400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.4 | 0.628 | 3.97 | -0.256 | 0.934 | -1.24 | -0.367 | 0.0115 | -0.155 | 9.58 | 24.6 | 1446 | -- | -- |
| 178.4 | 0.622 | 3.97 | -0.252 | 0.934 | -1.23 | -0.368 | -- | -0.154 | 9.58 | 24.61 | 1445 | -- | -- |
| 178.84 | 0.623 | 3.97 | -0.259 | 0.945 | -1.23 | -- | 0.0209 | -0.152 | 9.72 | 24.6 | 1420 | -- | -- |
| 178.83 | 0.623 | 3.97 | -0.263 | 0.938 | -1.23 | -- | -- | -0.153 | 9.72 | 24.64 | 1420 | -- | -- |
| 230.54 | 0.707 | 3.99 | -0.255 | -- | -1.22 | -- | -0.0613 | -0.146 | -- | 24.7 | 1461 | -- | -- |
| 225.65 | 0.704 | 3.87 | 0.175 | 0.942 | -- | -0.445 | -- | 0.285 | 9.17 | -- | -- | -- | -- |
| 226.33 | 0.705 | 3.87 | 0.16 | 0.942 | -- | -- | -- | 0.285 | 9.24 | -- | -- | -- | -- |
| 230.54 | 0.707 | 4 | -0.273 | -- | -1.23 | -- | -- | -0.151 | -- | 24.65 | 1461 | -- | -- |
| 178.26 | 0.622 | 3.96 | -- | 1.06 | -0.983 | -- | -- | -0.104 | 9.85 | 24 | 1096 | -- | -- |
| 277.89 | 0.779 | 3.9 | 0.156 | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
| 227 | 0.705 | 3.87 | -- | 0.942 | -- | -- | -- | 0.267 | 9.23 | -- | -- | -- | -- |
| 232.32 | 0.71 | 3.98 | -- | -- | -1.16 | -- | -- | -0.0996 | -- | 24.62 | 1458 | -- | -- |
| 278.53 | 0.779 | 3.9 | -- | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 5 | 172.59 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 26 | 176.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 28 | 176.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 29 | 176.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 34 | 176.57 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 45 | 177.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 46 | 177.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 55 | 177.20 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 60 | 177.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 67 | 177.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 102 | 177.76 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 132 | 177.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 151 | 178.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 18 |
| 154 | 178.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 176 | 178.26 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 210 | 178.42 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 341 | 179.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 346 | 179.24 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 387 | 179.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 404 | 179.47 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 444 | 179.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 4 | 21 |
| 462 | 179.76 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 537 | 180.11 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 604 | 180.41 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 663 | 180.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 743 | 181.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 746 | 181.10 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 767 | 181.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 772 | 181.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 862 | 181.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 876 | 181.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 940 | 181.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |