Os11g0589800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0589800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 568.58 | 1.12 | 3.07 | 1.14 | 0.0701 | -0.762 | -0.977 | 3.87 | 0.292 | 17.2 | 25.81 | 1452 | -- | -- |
| 574.38 | 1.12 | 3.19 | 0.28 | 0.0628 | -0.787 | -1.21 | -- | 0.0246 | 16.6 | 21.4 | 3808 | -- | -- |
| 570.95 | 1.11 | 3.07 | 1.18 | 0.0661 | -0.765 | -- | 4.01 | 0.293 | 17.7 | 25.9 | 1449 | -- | -- |
| 576.8 | 1.12 | 3.19 | 0.224 | 0.0606 | -0.731 | -- | -- | 0.0225 | 17.1 | 21.6 | 3664 | -- | -- |
| 571.15 | 1.11 | 3.07 | 1.17 | -- | -0.767 | -- | 3.99 | 0.296 | -- | 25.9 | 1432 | -- | -- |
| 588.16 | 1.14 | 3.25 | -0.206 | 0.0739 | -- | -1.05 | -- | -0.244 | 16.6 | -- | -- | -- | -- |
| 591.08 | 1.14 | 3.25 | -0.213 | 0.0685 | -- | -- | -- | -0.25 | 17.2 | -- | -- | -- | -- |
| 576.92 | 1.12 | 3.19 | 0.211 | -- | -0.736 | -- | -- | -0.000861 | -- | 21.52 | 3669 | -- | -- |
| 577.66 | 1.12 | 3.2 | -- | 0.0529 | -0.659 | -- | -- | -0.0437 | 17 | 21.59 | 3661 | -- | -- |
| 591.33 | 1.14 | 3.25 | -0.215 | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
| 592.28 | 1.14 | 3.25 | -- | 0.0722 | -- | -- | -- | -0.226 | 17.1 | -- | -- | -- | -- |
| 577.8 | 1.12 | 3.21 | -- | -- | -0.648 | -- | -- | -0.0489 | -- | 21.59 | 3661 | -- | -- |
| 592.55 | 1.14 | 3.25 | -- | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 560.78 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 2 | 560.78 | radiation | 1 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 3 | 561.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 4 | 561.17 | humidity | 80 | 720 | < th | dose independent | rect. | 5 | 1 |
| 6 | 561.17 | humidity | 80 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 15 | 561.99 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 25 | 561.99 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 42 | 562.68 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 45 | 562.78 | humidity | 80 | 720 | < th | dose independent | rect. | 2 | 6 |
| 52 | 563.24 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 61 | 563.92 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 75 | 564.01 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 77 | 564.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 78 | 564.05 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 82 | 564.26 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 101 | 564.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 108 | 564.61 | radiation | 1 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 114 | 564.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 118 | 564.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 139 | 565.00 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 141 | 565.01 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 161 | 565.46 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 195 | 565.72 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 197 | 565.73 | humidity | 90 | 43200 | > th | dose dependent | sin | 9 | NA |
| 198 | 565.74 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 210 | 565.75 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 8 |
| 223 | 565.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 228 | 565.83 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 4 |
| 239 | 565.90 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 242 | 565.92 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 267 | 566.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 270 | 566.07 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 275 | 566.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 281 | 566.12 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 282 | 566.13 | humidity | 90 | 43200 | > th | dose independent | sin | 8 | NA |
| 286 | 566.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 298 | 566.19 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 322 | 566.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 330 | 566.26 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 335 | 566.29 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 346 | 566.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 361 | 566.40 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 9 |
| 363 | 566.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 383 | 566.46 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 384 | 566.46 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 450 | 566.59 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 506 | 566.76 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 522 | 566.77 | humidity | 90 | 43200 | < th | dose independent | sin | 7 | NA |
| 551 | 566.85 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 575 | 566.94 | radiation | 20 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 578 | 566.95 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 581 | 566.96 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 618 | 567.04 | radiation | 30 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 634 | 567.06 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 638 | 567.08 | atmosphere | 995 | 10 | > th | dose independent | sin | 6 | NA |
| 652 | 567.13 | atmosphere | 995 | 10 | < th | dose independent | sin | 6 | NA |
| 653 | 567.13 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 654 | 567.13 | atmosphere | 995 | 10 | < th | dose dependent | sin | 6 | NA |
| 675 | 567.15 | atmosphere | 995 | 90 | < th | dose independent | rect. | 14 | 1 |
| 676 | 567.15 | atmosphere | 995 | 10 | < th | dose independent | rect. | 15 | 1 |
| 699 | 567.15 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 803 | 567.15 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 804 | 567.15 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 930 | 567.16 | humidity | 70 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 935 | 567.17 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 955 | 567.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 956 | 567.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |