Os11g0588400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0588400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.92 | 0.401 | 9.49 | -1.34 | 0.361 | -1.05 | 0.566 | 1.88 | -0.3 | 3.76 | 7.916 | 1453 | -- | -- |
| 78.93 | 0.414 | 9.48 | -1.11 | 0.369 | -1.05 | 0.637 | -- | -0.242 | 3.5 | 7.603 | 1470 | -- | -- |
| 73.71 | 0.4 | 9.5 | -1.37 | 0.395 | -1.1 | -- | 2.03 | -0.315 | 3.77 | 7.62 | 1468 | -- | -- |
| 79.82 | 0.416 | 9.47 | -1.13 | 0.342 | -1.02 | -- | -- | -0.24 | 4.6 | 7.613 | 1445 | -- | -- |
| 80.54 | 0.418 | 9.49 | -1.34 | -- | -1.06 | -- | 1.71 | -0.306 | -- | 7.629 | 1429 | -- | -- |
| 103.44 | 0.477 | 9.43 | -1.05 | 0.338 | -- | 0.829 | -- | -0.0424 | 3.81 | -- | -- | -- | -- |
| 104.89 | 0.48 | 9.43 | -1.06 | 0.366 | -- | -- | -- | -0.0475 | 4.86 | -- | -- | -- | -- |
| 85.64 | 0.431 | 9.47 | -1.12 | -- | -0.999 | -- | -- | -0.239 | -- | 7.721 | 1423 | -- | -- |
| 110.12 | 0.489 | 9.46 | -- | 0.348 | -1.03 | -- | -- | -0.133 | 4.17 | 10 | 1465 | -- | -- |
| 111.95 | 0.494 | 9.44 | -1.05 | -- | -- | -- | -- | -0.038 | -- | -- | -- | -- | -- |
| 134.73 | 0.543 | 9.41 | -- | 0.346 | -- | -- | -- | 0.071 | 4.96 | -- | -- | -- | -- |
| 115.43 | 0.5 | 9.46 | -- | -- | -0.948 | -- | -- | -0.124 | -- | 9.999 | 1433 | -- | -- |
| 141.05 | 0.554 | 9.41 | -- | -- | -- | -- | -- | 0.0785 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 16 |
| 2 | 72.37 | radiation | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 3 | 72.47 | radiation | 10 | 1440 | < th | dose dependent | sin | 13 | NA |
| 5 | 73.04 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 20 | 73.28 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 21 | 73.46 | humidity | 60 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 22 | 73.48 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 23 | 73.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 36 | 73.75 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 38 | 73.78 | humidity | 90 | 1440 | < th | dose dependent | sin | 3 | NA |
| 42 | 73.81 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 48 | 73.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 56 | 73.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 71 | 74.07 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 78 | 74.16 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 95 | 74.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 135 | 74.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 22 |
| 137 | 74.49 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 139 | 74.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 161 | 74.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 162 | 74.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 168 | 74.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 227 | 74.71 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 287 | 75.04 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 318 | 75.22 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 343 | 75.37 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 393 | 75.75 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 399 | 75.81 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 402 | 75.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 407 | 75.88 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 409 | 75.90 | radiation | 20 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 453 | 76.07 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 458 | 76.11 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 465 | 76.15 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 484 | 76.29 | radiation | 10 | 1440 | < th | dose dependent | sin | 0 | NA |
| 508 | 76.42 | radiation | 30 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 515 | 76.43 | radiation | 30 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 526 | 76.47 | radiation | 30 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 533 | 76.48 | radiation | 30 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 629 | 76.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 647 | 76.90 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 657 | 76.93 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 672 | 77.01 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 680 | 77.03 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 696 | 77.09 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 714 | 77.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 724 | 77.16 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 730 | 77.17 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 769 | 77.27 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 771 | 77.28 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 785 | 77.31 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 799 | 77.33 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 808 | 77.35 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 863 | 77.45 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 892 | 77.48 | humidity | 70 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 952 | 77.53 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |