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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0587600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PDR11 ABC transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.68 (0.0401) R2 : 0.378
β1 : 1.78 (0.134) R2dD : 0.377 R2D : -0.0399
β2 : -- (--) R2dC : -- R2C : --
β3 : 7.62 (0.586) R2dE : 3.14 R2E : -3.32
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.1 (1.32) R2dD*E : 2.46 R2D*E : -1.92
γ1 : 0.27 (0.0682) R2dN8 : 0.0341 R2N8 : -0.222
σ : 0.559
deviance : 143.94
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.8
memory length : 4641
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.73 0.547 3.64 1.76 0.287 6.48 0.986 12.7 0.295 2.23 19.24 4683 -- --
189.34 0.646 3.41 1.21 0.242 0.499 0.997 -- 0.116 2.08 19.24 4683 -- --
138.5 0.548 3.66 1.73 0.324 6.88 -- 13.5 0.27 3.6 19 4625 -- --
164.3 0.597 3.33 1.76 0.311 1.39 -- -- 0.477 3.49 25 4747 -- --
143.94 0.559 3.68 1.78 -- 7.62 -- 15.1 0.27 -- 18.8 4641 -- --
190.53 0.647 3.41 1.14 0.264 -- 0.949 -- 0.0935 2.19 -- -- -- --
193.37 0.651 3.41 1.11 0.291 -- -- -- 0.0866 3.5 -- -- -- --
169.6 0.607 3.33 1.84 -- 1.39 -- -- 0.448 -- 24.27 4743 -- --
219.61 0.69 3.42 -- 0.348 0.519 -- -- 0.047 2.87 38.84 2304 -- --
198.11 0.658 3.41 1.12 -- -- -- -- 0.0943 -- -- -- -- --
225.75 0.703 3.44 -- 0.313 -- -- -- -0.0369 3.48 -- -- -- --
224.97 0.699 3.42 -- -- 0.564 -- -- 0.0543 -- 40.63 1837 -- --
231.24 0.71 3.44 -- -- -- -- -- -0.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 131.29 wind 1.0 14400 < th dose dependent rect. 7 2
2 132.37 wind 1.0 14400 > th dose independent rect. 7 1
4 132.71 wind 1.0 14400 < th dose independent rect. 7 1
7 134.66 wind 1.0 14400 < th dose dependent rect. 6 9
8 134.68 wind 1.0 14400 < th dose dependent rect. 5 11
13 135.01 wind 1.0 14400 < th dose independent rect. 6 10
14 135.06 wind 1.0 14400 < th dose dependent rect. 7 5
18 135.21 wind 1.0 14400 > th dose independent rect. 6 10
20 135.28 temperature 20.0 4320 < th dose dependent rect. 6 1
22 135.40 wind 1.0 14400 > th dose independent rect. 6 12
25 135.49 wind 1.0 14400 > th dose independent rect. 5 14
36 135.68 wind 1.0 14400 < th dose dependent rect. 7 7
44 135.97 radiation 1.0 4320 > th dose independent rect. 15 1
49 136.08 radiation 1.0 4320 < th dose independent rect. 15 1
56 136.42 atmosphere 1010.0 14400 > th dose independent rect. 15 1
60 136.47 wind 1.0 14400 < th dose dependent rect. 5 18
65 136.78 atmosphere 1015.0 43200 > th dose independent rect. 21 2
67 136.79 wind 1.0 14400 < th dose dependent rect. 5 22
68 136.80 atmosphere 1015.0 43200 < th dose independent rect. 20 4
79 136.94 atmosphere 1010.0 43200 > th dose dependent rect. 16 1
97 137.13 wind 1.0 14400 > th dose independent rect. 5 18
103 137.16 wind 1.0 14400 < th dose independent rect. 5 18
143 137.48 radiation 1.0 43200 < th dose independent rect. 16 2
158 137.59 temperature 20.0 4320 < th dose dependent rect. 4 15
204 137.90 wind 1.0 14400 < th dose independent rect. 6 21
205 137.92 radiation 1.0 43200 < th dose independent rect. 15 15
211 137.94 wind 1.0 14400 > th dose independent rect. 5 21
258 138.15 atmosphere 1015.0 43200 < th dose independent sin 15 NA
259 138.15 radiation 1.0 43200 > th dose independent rect. 16 2
269 138.18 humidity 80.0 43200 > th dose independent rect. 17 2
276 138.21 humidity 80.0 43200 < th dose independent rect. 17 2
294 138.26 radiation 1.0 43200 < th dose independent rect. 16 6
346 138.36 radiation 1.0 43200 > th dose independent rect. 15 15
355 138.38 temperature 20.0 4320 < th dose dependent sin 3 NA
419 138.53 temperature 20.0 4320 < th dose dependent rect. 23 20
430 138.56 wind 1.0 14400 > th dose independent sin 0 NA
441 138.59 temperature 20.0 4320 < th dose independent rect. 6 1
447 138.61 atmosphere 1015.0 43200 > th dose independent sin 15 NA
472 138.65 atmosphere 1015.0 43200 > th dose independent rect. 12 12
485 138.67 temperature 20.0 4320 < th dose dependent rect. 23 13
523 138.73 radiation 1.0 43200 < th dose independent sin 14 NA
537 138.75 wind 1.0 14400 < th dose independent sin 0 NA
613 138.84 atmosphere 1015.0 43200 < th dose independent rect. 19 20
710 138.92 precipitation 0.1 43200 > th dose independent rect. 20 7
711 138.92 precipitation 0.1 43200 < th dose independent rect. 20 7
720 138.92 precipitation 0.1 43200 < th dose dependent rect. 20 7
723 138.92 radiation 10.0 43200 < th dose dependent rect. 16 13
764 138.97 wind 1.0 14400 < th dose dependent sin 1 NA
765 138.98 temperature 20.0 4320 > th dose independent rect. 6 1
775 138.98 radiation 40.0 43200 < th dose dependent rect. 17 6
799 139.00 atmosphere 1010.0 43200 > th dose dependent sin 21 NA
801 139.00 radiation 10.0 43200 < th dose dependent rect. 16 7
815 139.01 radiation 10.0 43200 < th dose dependent rect. 16 3
840 139.03 radiation 30.0 43200 < th dose dependent rect. 17 2
860 139.05 atmosphere 1015.0 43200 < th dose independent no NA NA
911 139.08 atmosphere 1015.0 43200 > th dose independent rect. 20 18
988 139.18 radiation 1.0 43200 > th dose dependent rect. 17 1