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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0583200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0489) R2 : 0.0734
β1 : -0.123 (0.185) R2dD : 0.000992 R2D : -0.0045
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.51 (0.412) R2dE : 0.00553 R2E : -0.0201
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -16.5 (3.23) R2dD*E : 0.0954 R2D*E : 0.0543
γ1 : -0.206 (0.106) R2dN8 : 0.0109 R2N8 : 0.00367
σ : 0.905
deviance : 377.24
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 7.031
memory length : 33
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 1.05

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
372.37 0.907 3.25 -0.117 0.181 -0.479 1.03 -16.5 -0.208 4.11 7.004 31 16 1
388.92 0.919 3.27 0.05 0.152 0.918 1.21 -- -0.218 3.98 6.7 111 16 0.151
374.88 0.902 3.26 -0.121 0.193 -0.424 -- -16.8 -0.225 5.67 7.019 34 16 0.99
393.75 0.924 3.27 0.0551 0.152 0.893 -- -- -0.216 4.38 6.685 112 16 0.166
377.24 0.905 3.25 -0.123 -- -0.51 -- -16.5 -0.206 -- 7.031 33 16 1.05
397.81 0.935 3.26 0.154 0.0959 -- 1.47 -- -0.138 4.05 -- -- -- --
403.72 0.941 3.27 0.137 0.128 -- -- -- -0.147 6.08 -- -- -- --
396.05 0.927 3.27 0.0661 -- 0.856 -- -- -0.211 -- 6.7 111 16 0.167
393.7 0.924 3.28 -- 0.152 1.03 -- -- -0.218 5.52 6.742 111 16 0.15
404.57 0.94 3.27 0.141 -- -- -- -- -0.144 -- -- -- -- --
404.22 0.94 3.27 -- 0.13 -- -- -- -0.162 6.02 -- -- -- --
396.39 0.927 3.28 -- -- 1.01 -- -- -0.215 -- 6.743 111 16 0.167
405.09 0.939 3.27 -- -- -- -- -- -0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 372.37 wind 7.0 30 > th dose dependent rect. 16 1
3 372.70 wind 7.0 10 > th dose independent rect. 16 1
4 373.35 humidity 80.0 10 > th dose independent rect. 10 1
6 374.03 humidity 80.0 10 > th dose dependent rect. 10 1
9 375.04 atmosphere 1005.0 90 < th dose dependent rect. 8 1
10 375.84 humidity 70.0 10 > th dose independent rect. 16 1
14 377.09 humidity 60.0 10 > th dose dependent rect. 16 1
27 377.97 radiation 10.0 10 < th dose dependent rect. 16 1
29 378.17 temperature 30.0 30 < th dose dependent rect. 16 1
31 378.30 radiation 10.0 10 < th dose independent rect. 16 1
36 378.52 radiation 1.0 720 < th dose independent rect. 8 1
37 378.52 radiation 1.0 720 < th dose dependent rect. 8 1
51 379.93 temperature 30.0 10 < th dose independent rect. 16 1
56 380.08 radiation 1.0 90 < th dose independent rect. 14 1
57 380.08 radiation 1.0 90 < th dose dependent rect. 14 1
61 380.21 temperature 20.0 270 > th dose independent rect. 2 7
70 381.28 atmosphere 1005.0 30 > th dose independent rect. 16 1
72 381.31 atmosphere 1005.0 30 > th dose dependent rect. 16 1
73 381.37 humidity 80.0 720 > th dose dependent rect. 12 1
105 382.87 radiation 10.0 10 < th dose independent rect. 11 6
110 383.01 humidity 80.0 720 > th dose independent rect. 12 1
129 383.87 temperature 20.0 30 > th dose dependent rect. 2 8
139 384.11 atmosphere 1000.0 90 < th dose independent rect. 13 1
143 384.13 atmosphere 1000.0 10 < th dose dependent rect. 14 1
152 384.17 temperature 20.0 270 > th dose independent rect. 6 1
163 384.27 wind 1.0 10 < th dose independent rect. 13 1
165 384.27 wind 1.0 10 < th dose dependent rect. 13 1
189 384.68 wind 9.0 10 < th dose independent rect. 16 1
190 384.68 temperature 10.0 10 > th dose independent rect. 16 1
192 384.68 atmosphere 1010.0 10 < th dose independent rect. 16 1
195 384.68 precipitation 0.1 10 < th dose independent rect. 16 1
196 384.68 temperature 10.0 10 > th dose independent rect. 17 23
197 384.68 precipitation 0.1 10 < th dose dependent rect. 16 1
198 384.69 humidity 70.0 4320 > th dose independent rect. 22 8
199 384.70 wind 1.0 14400 < th dose dependent rect. 6 1
200 384.70 humidity 80.0 14400 < th dose dependent rect. 1 1
202 384.71 humidity 90.0 10 < th dose independent rect. 16 1
204 384.73 humidity 80.0 270 > th dose independent rect. 4 5
208 384.76 atmosphere 995.0 10 > th dose independent rect. 16 1
218 384.90 temperature 10.0 1440 > th dose independent rect. 17 1
222 384.90 radiation 30.0 1440 < th dose independent rect. 17 1
228 384.90 temperature 10.0 1440 > th dose independent rect. 18 23
260 385.35 atmosphere 1015.0 10 < th dose dependent rect. 16 1
261 385.36 atmosphere 1005.0 10 < th dose independent rect. 9 1
281 385.49 radiation 10.0 10 < th dose dependent rect. 12 1
289 385.57 wind 1.0 14400 < th dose independent rect. 6 1
299 385.64 wind 1.0 43200 > th dose independent rect. 6 3
305 385.69 wind 3.0 90 < th dose independent rect. 8 2
308 385.70 radiation 40.0 10 > th dose dependent rect. 14 1
347 385.75 temperature 25.0 90 < th dose independent rect. 14 1
349 385.76 temperature 10.0 720 > th dose dependent rect. 22 3
351 385.78 temperature 30.0 720 < th dose dependent rect. 3 1
353 385.84 radiation 30.0 10 < th dose independent rect. 14 3
363 385.96 wind 1.0 14400 > th dose independent rect. 6 1
366 386.01 humidity 80.0 270 < th dose independent rect. 2 12
375 386.09 humidity 50.0 10 > th dose independent rect. 17 23
381 386.15 temperature 20.0 30 > th dose dependent rect. 16 18
392 386.22 temperature 20.0 720 < th dose independent rect. 3 1
396 386.24 radiation 1.0 30 > th dose independent rect. 16 1
399 386.28 temperature 10.0 30 > th dose dependent rect. 16 1
413 386.39 radiation 1.0 1440 < th dose dependent rect. 13 3
420 386.45 wind 9.0 43200 > th dose dependent rect. 13 1
438 386.57 radiation 1.0 1440 < th dose dependent rect. 8 8
441 386.60 radiation 10.0 30 > th dose dependent rect. 16 15
446 386.62 radiation 10.0 30 > th dose independent rect. 16 15
451 386.67 temperature 20.0 270 > th dose independent rect. 2 19
453 386.67 radiation 1.0 270 < th dose dependent rect. 8 8
455 386.69 wind 9.0 30 < th dose dependent rect. 16 1
459 386.70 radiation 20.0 10 < th dose dependent rect. 9 8
461 386.71 temperature 20.0 270 > th dose independent rect. 5 15
475 386.85 temperature 10.0 270 > th dose dependent rect. 14 20
479 386.87 atmosphere 1005.0 270 < th dose dependent rect. 6 1
480 386.88 radiation 1.0 1440 > th dose independent rect. 8 1
487 386.90 radiation 10.0 10 < th dose dependent rect. 11 6
508 387.00 radiation 1.0 1440 > th dose independent rect. 8 6
521 387.06 temperature 10.0 720 > th dose dependent rect. 22 12
543 387.17 temperature 25.0 720 < th dose independent rect. 1 4
556 387.18 humidity 70.0 14400 < th dose independent rect. 19 14
574 387.27 wind 3.0 90 < th dose dependent rect. 9 1
583 387.32 radiation 1.0 1440 > th dose independent rect. 13 1
587 387.34 radiation 1.0 1440 < th dose independent rect. 13 2
588 387.34 humidity 80.0 14400 < th dose independent rect. 22 5
589 387.34 radiation 1.0 1440 < th dose independent rect. 8 7
598 387.35 temperature 20.0 30 > th dose dependent rect. 24 10
600 387.36 radiation 1.0 1440 < th dose independent rect. 10 5
602 387.36 humidity 50.0 14400 > th dose independent rect. 18 16
607 387.37 radiation 20.0 30 < th dose independent sin 16 NA
612 387.38 humidity 80.0 14400 < th dose independent rect. 22 9
620 387.41 wind 3.0 43200 > th dose independent rect. 1 1
641 387.43 radiation 1.0 30 > th dose dependent rect. 16 1
645 387.44 humidity 50.0 14400 > th dose independent rect. 8 2
646 387.44 humidity 70.0 14400 < th dose dependent rect. 19 14
647 387.45 humidity 80.0 14400 < th dose independent rect. 1 3
650 387.45 wind 5.0 14400 < th dose dependent rect. 1 1
651 387.45 radiation 10.0 270 > th dose dependent rect. 16 1
654 387.46 humidity 50.0 14400 > th dose independent rect. 6 4
659 387.46 radiation 10.0 10 > th dose dependent rect. 12 5
692 387.50 humidity 80.0 14400 > th dose independent rect. 1 4
711 387.51 humidity 80.0 14400 > th dose independent rect. 1 1
734 387.55 precipitation 0.1 14400 < th dose independent rect. 4 1
740 387.55 precipitation 0.1 14400 < th dose dependent rect. 4 1
755 387.58 radiation 10.0 43200 < th dose dependent rect. 11 1
767 387.62 wind 1.0 14400 > th dose dependent rect. 1 1
773 387.62 radiation 40.0 720 < th dose dependent rect. 16 15
783 387.64 humidity 70.0 14400 < th dose dependent rect. 20 12
785 387.65 humidity 70.0 14400 < th dose independent rect. 20 12
797 387.67 temperature 20.0 720 > th dose independent rect. 22 12
815 387.71 wind 1.0 720 > th dose independent rect. 3 1
820 387.72 humidity 50.0 14400 < th dose independent rect. 8 3
850 387.75 humidity 70.0 14400 > th dose independent rect. 19 14
858 387.77 humidity 70.0 14400 > th dose independent rect. 20 12
862 387.78 radiation 1.0 270 < th dose independent rect. 8 7
869 387.80 atmosphere 1000.0 43200 < th dose independent rect. 18 2
876 387.82 humidity 50.0 14400 < th dose dependent rect. 10 1
894 387.83 humidity 80.0 14400 > th dose independent rect. 4 2
896 387.83 humidity 50.0 14400 > th dose independent rect. 23 11
902 387.84 precipitation 0.1 14400 > th dose dependent rect. 4 1
910 387.87 humidity 80.0 14400 < th dose independent rect. 4 1
918 387.88 temperature 20.0 30 > th dose dependent rect. 9 1
923 387.89 atmosphere 995.0 10 > th dose independent rect. 17 23
926 387.90 wind 5.0 1440 < th dose independent rect. 16 1
945 387.91 temperature 20.0 720 < th dose independent rect. 2 7
949 387.92 radiation 20.0 10 > th dose independent rect. 12 4
962 387.93 humidity 70.0 270 > th dose dependent rect. 5 4
963 387.94 radiation 30.0 30 < th dose independent rect. 9 1
964 387.94 radiation 1.0 1440 > th dose independent rect. 10 4
975 387.96 precipitation 0.1 14400 > th dose independent rect. 4 1
977 387.96 humidity 50.0 14400 > th dose independent rect. 3 7
982 387.98 humidity 90.0 30 < th dose dependent rect. 16 1
983 387.98 atmosphere 1000.0 43200 < th dose dependent rect. 16 3
990 387.99 humidity 80.0 270 > th dose independent rect. 4 10