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Os11g0579800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Gar1 protein RNA-binding region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0294) R2 : 0.709
β1 : 1.34 (0.108) R2dD : 0.103 R2D : 0.0764
β2 : 2.38 (0.0764) R2dC : 0.622 R2C : 0.599
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.323 (0.0628) R2dN8 : 0.0226 R2N8 : -0.00588
σ : 0.553
deviance : 139.26
__
_____
C
peak time of C : 17.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.98 0.519 12.4 1.53 2.37 -0.359 1.09 -1.85 0.26 17.2 0.348 6933 -- --
120.7 0.512 12.3 1.73 2.39 -0.766 1.21 -- 0.245 17.2 1.081 20481 -- --
124.43 0.52 12.4 1.5 2.38 -0.325 -- -2.01 0.262 17.2 0.4468 7151 -- --
124.28 0.519 12.3 1.72 2.4 -0.733 -- -- 0.241 17.2 1.305 20525 -- --
419.75 0.954 12.3 1.44 -- -0.323 -- -1.92 0.204 -- 0.4512 8006 -- --
135.86 0.546 12.3 1.34 2.37 -- 1.16 -- 0.317 17.2 -- -- -- --
139.26 0.553 12.3 1.34 2.38 -- -- -- 0.323 17.2 -- -- -- --
421.23 0.956 12.3 1.61 -- -0.717 -- -- 0.22 -- 0.4984 12553 -- --
186.51 0.636 12.4 -- 2.37 -0.102 -- -- 0.164 17.2 1.896 15371 -- --
435.7 0.975 12.3 1.26 -- -- -- -- 0.263 -- -- -- -- --
186.9 0.64 12.4 -- 2.36 -- -- -- 0.173 17.2 -- -- -- --
466.61 1.01 12.3 -- -- 0.484 -- -- 0.238 -- 0.5 47520 -- --
477.63 1.02 12.3 -- -- -- -- -- 0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.65 temperature 10.0 90 > th dose dependent rect. 8 20
3 114.59 temperature 10.0 10 > th dose dependent rect. 9 19
6 115.03 atmosphere 1005.0 90 > th dose dependent rect. 3 5
8 115.40 temperature 30.0 90 < th dose dependent rect. 4 16
12 115.92 temperature 15.0 90 > th dose dependent rect. 8 7
17 116.29 atmosphere 1005.0 270 > th dose dependent rect. 4 1
19 116.32 wind 1.0 43200 < th dose dependent rect. 6 22
37 117.13 temperature 10.0 90 > th dose dependent rect. 8 9
39 117.14 temperature 15.0 10 > th dose dependent rect. 9 6
42 117.20 wind 1.0 43200 > th dose independent rect. 24 2
45 117.24 wind 1.0 43200 < th dose independent rect. 24 2
48 117.27 wind 1.0 43200 > th dose independent rect. 8 1
86 117.97 wind 5.0 270 < th dose independent rect. 4 1
91 118.02 atmosphere 1005.0 270 > th dose independent rect. 3 4
105 118.27 humidity 70.0 90 > th dose independent rect. 4 15
110 118.35 precipitation 0.1 90 < th dose independent rect. 8 20
112 118.35 precipitation 0.1 90 < th dose dependent rect. 8 20
125 118.55 temperature 15.0 10 > th dose dependent rect. 9 9
140 118.69 radiation 20.0 270 < th dose dependent rect. 3 6
142 118.72 wind 1.0 43200 > th dose independent rect. 17 20
146 118.74 precipitation 0.1 270 < th dose independent rect. 5 23
148 118.74 precipitation 0.1 270 < th dose dependent rect. 5 23
149 118.75 wind 5.0 90 < th dose independent rect. 4 4
152 118.77 atmosphere 1005.0 270 > th dose independent rect. 4 1
154 118.77 wind 1.0 43200 < th dose dependent rect. 10 19
158 118.82 radiation 1.0 270 < th dose independent rect. 3 15
168 118.92 radiation 40.0 270 < th dose dependent rect. 3 14
174 119.01 wind 1.0 43200 > th dose independent rect. 19 18
178 119.07 temperature 15.0 270 > th dose dependent rect. 9 1
181 119.10 wind 1.0 43200 < th dose dependent rect. 8 4
185 119.13 radiation 1.0 270 < th dose dependent rect. 3 15
195 119.19 humidity 90.0 43200 < th dose dependent rect. 4 1
198 119.20 wind 9.0 90 < th dose independent rect. 8 20
206 119.27 wind 3.0 43200 < th dose dependent rect. 6 6
208 119.27 radiation 20.0 270 < th dose dependent rect. 3 8
210 119.28 wind 1.0 90 > th dose independent rect. 4 4
211 119.31 wind 3.0 43200 < th dose dependent rect. 6 3
223 119.38 wind 9.0 270 < th dose independent rect. 5 23
224 119.38 radiation 1.0 270 < th dose dependent rect. 4 1
225 119.41 humidity 70.0 90 > th dose independent rect. 4 13
226 119.41 temperature 30.0 90 < th dose independent rect. 4 15
228 119.44 humidity 80.0 43200 < th dose dependent rect. 19 13
232 119.47 temperature 30.0 270 < th dose dependent rect. 4 1
243 119.51 humidity 80.0 43200 < th dose independent rect. 19 13
246 119.51 humidity 60.0 90 > th dose dependent rect. 4 16
248 119.52 wind 1.0 43200 > th dose independent rect. 17 22
252 119.53 humidity 80.0 43200 > th dose independent rect. 24 9
255 119.55 temperature 10.0 1440 > th dose independent rect. 5 5
258 119.55 atmosphere 995.0 1440 > th dose independent rect. 5 5
259 119.55 atmosphere 1015.0 1440 < th dose independent rect. 5 5
261 119.55 temperature 10.0 1440 > th dose independent rect. 10 19
270 119.59 humidity 80.0 43200 < th dose independent rect. 24 9
277 119.61 precipitation 0.1 270 < th dose independent rect. 4 1
279 119.61 precipitation 0.1 270 < th dose dependent rect. 4 1
283 119.62 radiation 40.0 270 < th dose dependent rect. 2 11
284 119.62 temperature 15.0 10 > th dose dependent rect. 9 13
286 119.63 precipitation 0.1 90 < th dose independent rect. 4 4
289 119.63 precipitation 0.1 90 < th dose dependent rect. 4 4
293 119.63 temperature 15.0 90 > th dose dependent rect. 8 13
299 119.66 humidity 80.0 43200 > th dose independent rect. 20 12
300 119.66 wind 1.0 43200 < th dose dependent rect. 19 23
302 119.67 temperature 10.0 270 > th dose independent rect. 4 1
304 119.67 temperature 30.0 270 < th dose independent rect. 4 1
305 119.67 humidity 50.0 270 > th dose independent rect. 4 1
308 119.67 atmosphere 995.0 270 > th dose independent rect. 4 1
309 119.67 atmosphere 1010.0 270 < th dose independent rect. 4 1
311 119.67 radiation 20.0 270 < th dose independent rect. 4 1
315 119.67 temperature 10.0 270 > th dose independent rect. 5 23
321 119.68 radiation 20.0 270 < th dose independent rect. 2 7
326 119.70 temperature 10.0 90 > th dose independent rect. 4 4
328 119.70 temperature 30.0 90 < th dose independent rect. 4 4
329 119.70 humidity 50.0 90 > th dose independent rect. 4 4
331 119.70 atmosphere 995.0 90 > th dose independent rect. 4 4
332 119.70 atmosphere 1015.0 90 < th dose independent rect. 4 4
333 119.70 temperature 10.0 90 > th dose independent rect. 8 20
342 119.72 radiation 40.0 270 < th dose dependent rect. 4 1
349 119.74 precipitation 0.1 270 < th dose independent rect. 6 21
353 119.74 precipitation 0.1 270 < th dose dependent rect. 6 21
360 119.77 radiation 10.0 270 < th dose independent rect. 3 5
366 119.81 wind 3.0 43200 > th dose independent rect. 6 1
379 119.84 wind 3.0 43200 < th dose independent rect. 6 1
382 119.85 wind 1.0 43200 < th dose dependent rect. 24 2
385 119.85 wind 1.0 43200 < th dose dependent rect. 21 23
387 119.86 radiation 40.0 90 < th dose independent rect. 4 16
392 119.87 radiation 40.0 90 < th dose independent rect. 4 4
394 119.87 wind 1.0 43200 < th dose dependent rect. 15 22
399 119.89 radiation 40.0 270 < th dose independent rect. 3 14
403 119.91 radiation 1.0 270 < th dose independent rect. 4 1
405 119.91 wind 1.0 43200 > th dose independent rect. 6 6
414 119.93 humidity 80.0 43200 < th dose dependent rect. 1 6
418 119.94 wind 9.0 1440 < th dose independent rect. 5 4
422 119.94 humidity 50.0 1440 > th dose independent rect. 5 4
433 119.95 radiation 1.0 270 < th dose independent rect. 3 9
437 119.96 wind 1.0 43200 > th dose independent rect. 7 4
440 119.96 wind 1.0 43200 > th dose independent rect. 21 16
454 119.99 radiation 1.0 270 < th dose dependent rect. 4 8
461 120.01 humidity 70.0 90 > th dose independent rect. 4 7
531 120.14 precipitation 0.1 4320 > th dose dependent rect. 23 19
532 120.15 humidity 80.0 43200 < th dose independent sin 10 NA
537 120.16 wind 1.0 43200 < th dose dependent no NA NA
538 120.16 radiation 10.0 43200 < th dose dependent rect. 8 2
593 120.28 wind 9.0 270 < th dose dependent rect. 4 1
595 120.28 wind 9.0 14400 < th dose dependent rect. 7 3
618 120.33 radiation 10.0 43200 > th dose independent rect. 9 1
620 120.33 wind 1.0 43200 < th dose dependent rect. 21 21
622 120.34 wind 9.0 270 < th dose independent rect. 6 21
631 120.35 wind 9.0 10 < th dose independent rect. 9 19
637 120.36 humidity 90.0 90 < th dose independent rect. 8 7
639 120.36 humidity 90.0 270 < th dose dependent rect. 9 1
658 120.39 radiation 40.0 10 < th dose independent rect. 5 15
665 120.40 wind 1.0 14400 > th dose dependent rect. 7 3
669 120.41 radiation 20.0 43200 > th dose independent rect. 11 1
717 120.50 humidity 80.0 43200 > th dose independent sin 10 NA
728 120.52 wind 1.0 43200 > th dose independent rect. 5 23
737 120.54 wind 9.0 14400 < th dose dependent rect. 6 5
756 120.57 humidity 60.0 10 > th dose dependent rect. 5 15
770 120.59 humidity 90.0 10 < th dose dependent rect. 9 6
782 120.61 wind 1.0 43200 > th dose independent rect. 3 23
789 120.62 wind 1.0 270 > th dose independent rect. 2 6
790 120.62 atmosphere 995.0 90 > th dose independent rect. 8 20
805 120.64 wind 9.0 14400 < th dose dependent sin 5 NA
817 120.66 radiation 30.0 90 < th dose independent rect. 4 7
822 120.66 wind 9.0 14400 < th dose dependent rect. 20 18
841 120.70 humidity 80.0 43200 > th dose independent rect. 5 1
858 120.72 wind 1.0 43200 > th dose independent rect. 14 23
866 120.73 temperature 25.0 90 > th dose dependent sin 3 NA
871 120.74 wind 1.0 14400 > th dose independent rect. 3 10
873 120.74 wind 1.0 14400 > th dose dependent rect. 6 5
888 120.77 humidity 80.0 43200 < th dose independent rect. 5 1
896 120.77 wind 1.0 14400 > th dose dependent rect. 20 18
910 120.78 wind 3.0 14400 < th dose dependent rect. 3 10
918 120.79 humidity 80.0 10 < th dose independent rect. 9 6
919 120.79 wind 3.0 43200 < th dose independent rect. 6 11
923 120.79 wind 1.0 14400 > th dose dependent sin 5 NA
925 120.79 wind 1.0 14400 > th dose dependent rect. 5 7
931 120.80 radiation 40.0 90 < th dose independent rect. 4 19
950 120.81 temperature 10.0 270 > th dose independent rect. 6 21
965 120.82 wind 9.0 14400 < th dose dependent rect. 24 15
987 120.85 radiation 40.0 270 > th dose independent rect. 9 1
990 120.85 wind 3.0 43200 > th dose independent rect. 5 17
991 120.85 wind 3.0 43200 < th dose independent rect. 5 17