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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0579400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.54 (0.0369) R2 : 0.248
β1 : 1.46 (0.135) R2dD : 0.2 R2D : 0.115
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.612 (0.0788) R2dN8 : 0.133 R2N8 : 0.0486
σ : 0.693
deviance : 219.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.77 0.669 4.54 1.48 0.242 0.503 0.535 0.495 0.607 7.35 25.09 10 -- --
203.57 0.665 4.54 1.46 0.248 0.489 0.284 -- 0.605 6.47 25.09 10 -- --
203.2 0.664 4.54 1.47 0.257 0.508 -- 0.376 0.59 6.64 25.09 9 -- --
203.26 0.664 4.54 1.47 0.256 0.449 -- -- 0.6 5.83 25.09 8 -- --
206.44 0.669 4.54 1.49 -- 0.471 -- 0.35 0.609 -- 25.06 9 -- --
211.16 0.681 4.54 1.44 0.391 -- -0.101 -- 0.602 3.22 -- -- -- --
211.19 0.681 4.54 1.44 0.391 -- -- -- 0.602 3.25 -- -- -- --
206.63 0.669 4.54 1.48 -- 0.475 -- -- 0.606 -- 25.07 8 -- --
260.13 0.751 4.58 -- 0.285 0.428 -- -- 0.444 5.62 27.15 8 -- --
219.84 0.693 4.54 1.46 -- -- -- -- 0.612 -- -- -- -- --
266.2 0.763 4.58 -- 0.419 -- -- -- 0.441 3.25 -- -- -- --
264.3 0.757 4.58 -- -- 0.465 -- -- 0.451 -- 27.21 8 -- --
276.17 0.776 4.58 -- -- -- -- -- 0.45 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.97 temperature 25 270 > th dose dependent rect. 19 18
2 201.13 humidity 50 14400 < th dose dependent rect. 11 1
4 201.36 wind 9 90 > th dose independent rect. 18 16
5 201.39 humidity 50 14400 < th dose independent rect. 11 1
6 201.39 temperature 20 10 < th dose dependent rect. 20 2
9 201.48 wind 9 90 > th dose independent rect. 18 8
17 201.51 temperature 20 90 < th dose independent rect. 20 1
18 201.51 temperature 20 90 < th dose dependent rect. 20 1
23 201.60 humidity 50 14400 < th dose dependent rect. 13 1
24 201.60 temperature 15 270 > th dose dependent rect. 6 8
25 201.62 wind 9 90 > th dose independent rect. 18 5
28 201.63 wind 9 4320 > th dose independent rect. 10 1
32 201.64 humidity 50 14400 < th dose dependent rect. 11 3
34 201.65 atmosphere 1005 30 > th dose dependent rect. 21 1
36 201.65 humidity 50 14400 < th dose dependent rect. 11 5
40 201.68 wind 9 30 < th dose independent sin 10 NA
43 201.70 radiation 40 10 < th dose dependent sin 0 NA
45 201.78 wind 9 4320 < th dose independent rect. 10 1
73 201.89 humidity 90 1440 < th dose dependent rect. 2 2
78 201.90 wind 9 4320 > th dose dependent rect. 10 3
79 201.91 wind 9 30 > th dose independent sin 10 NA
80 201.91 wind 9 90 > th dose dependent rect. 18 8
89 201.93 radiation 30 10 < th dose independent rect. 5 15
160 202.05 wind 9 90 > th dose dependent rect. 18 5
175 202.11 humidity 50 14400 < th dose dependent sin 3 NA
180 202.12 humidity 50 14400 < th dose dependent rect. 15 23
182 202.13 wind 9 4320 > th dose dependent rect. 5 8
183 202.13 temperature 20 10 > th dose dependent rect. 7 9
204 202.17 atmosphere 995 90 > th dose dependent rect. 4 15
217 202.24 temperature 30 90 < th dose dependent rect. 4 15
236 202.28 wind 7 4320 > th dose dependent rect. 10 1
237 202.29 temperature 30 10 < th dose dependent rect. 5 14
239 202.30 temperature 15 10 > th dose dependent rect. 7 21
273 202.33 humidity 50 14400 < th dose dependent no NA NA
381 202.36 wind 9 4320 > th dose independent rect. 5 8
386 202.38 wind 9 4320 < th dose independent rect. 5 8
388 202.40 temperature 25 270 > th dose dependent rect. 10 2
396 202.42 temperature 25 270 > th dose independent rect. 18 20
399 202.45 temperature 25 270 > th dose dependent rect. 9 4
400 202.45 temperature 10 270 > th dose dependent rect. 17 22
401 202.46 wind 9 4320 > th dose independent rect. 10 3
408 202.49 temperature 25 270 < th dose independent rect. 1 21
433 202.58 radiation 40 10 < th dose dependent rect. 5 15
439 202.59 temperature 25 270 > th dose independent rect. 8 6
445 202.59 temperature 10 270 > th dose dependent rect. 7 18
446 202.59 temperature 20 10 > th dose dependent rect. 20 19
454 202.62 temperature 15 4320 > th dose independent rect. 12 4
467 202.63 wind 9 90 > th dose dependent rect. 18 3
472 202.63 radiation 40 10 < th dose dependent rect. 5 12
487 202.69 temperature 20 10 > th dose dependent rect. 7 17
507 202.75 radiation 40 270 < th dose independent rect. 2 15
513 202.78 wind 7 90 > th dose dependent sin 10 NA
550 202.84 humidity 80 1440 > th dose independent rect. 23 9
552 202.84 radiation 40 270 > th dose dependent rect. 10 2
578 202.88 radiation 40 10 < th dose dependent rect. 13 23
584 202.92 radiation 40 10 < th dose dependent no NA NA
590 202.93 radiation 40 10 < th dose dependent rect. 21 23
591 202.94 atmosphere 1005 30 > th dose independent rect. 21 1
593 202.94 wind 9 90 > th dose independent rect. 21 13
608 202.97 atmosphere 1000 10 < th dose dependent rect. 11 3
611 202.97 wind 9 90 > th dose dependent rect. 21 13
616 202.99 temperature 25 270 > th dose independent rect. 9 4
624 203.01 humidity 90 1440 < th dose independent rect. 2 2
627 203.02 temperature 20 1440 > th dose independent rect. 13 1
628 203.02 temperature 25 270 > th dose independent rect. 7 17
638 203.04 wind 9 90 > th dose dependent rect. 21 5
646 203.04 radiation 1 10 > th dose dependent rect. 7 12
676 203.07 atmosphere 995 10 > th dose dependent rect. 5 15
680 203.07 radiation 40 10 < th dose dependent rect. 15 23
681 203.08 wind 9 90 > th dose independent rect. 21 5
689 203.08 temperature 25 270 > th dose dependent sin 7 NA
724 203.13 temperature 25 270 < th dose independent rect. 2 14
727 203.13 radiation 40 270 > th dose dependent rect. 14 22
729 203.14 temperature 30 10 < th dose dependent rect. 5 17
731 203.14 radiation 40 10 < th dose dependent rect. 11 23
745 203.16 atmosphere 1000 270 < th dose independent rect. 10 1
748 203.16 wind 9 4320 > th dose independent rect. 23 14
779 203.18 humidity 50 14400 > th dose independent rect. 11 1
780 203.18 wind 9 4320 < th dose independent rect. 2 11
784 203.18 radiation 1 10 > th dose dependent rect. 7 9
786 203.19 radiation 30 10 < th dose independent rect. 5 12
796 203.20 wind 9 4320 > th dose dependent rect. 23 14
802 203.21 atmosphere 1000 270 < th dose dependent rect. 10 1
804 203.22 wind 9 4320 < th dose independent rect. 23 14
833 203.24 wind 9 4320 > th dose dependent rect. 21 16
861 203.28 radiation 30 10 < th dose independent sin 23 NA
869 203.29 temperature 10 10 > th dose dependent sin 23 NA
870 203.29 wind 7 90 > th dose dependent rect. 21 2
886 203.32 wind 7 90 > th dose independent rect. 21 2
915 203.33 humidity 70 1440 > th dose dependent rect. 2 1
937 203.35 humidity 90 1440 < th dose dependent sin 8 NA
942 203.36 atmosphere 1000 90 > th dose independent rect. 4 15
945 203.36 humidity 90 270 < th dose dependent rect. 23 9
958 203.37 radiation 1 10 > th dose dependent sin 22 NA
964 203.38 humidity 50 14400 > th dose independent rect. 19 10
986 203.39 temperature 30 270 < th dose dependent rect. 2 15