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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0579000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.24 (0.0368) R2 : 0.611
β1 : -1.36 (0.152) R2dD : 0.0961 R2D : -0.0759
β2 : 1.76 (0.088) R2dC : 0.344 R2C : 0.378
β3 : 2.29 (0.146) R2dE : 0.322 R2E : 0.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.313 (0.086) R2dN8 : 0.0192 R2N8 : -0.0481
σ : 0.667
deviance : 205.27
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_____
C
peak time of C : 21.4
E
wheather : temperature
threshold : 16.17
memory length : 6679
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.02 0.669 4.31 -1.76 1.75 2.03 0.328 -1.83 -0.435 21.4 18.51 6576 -- --
205 0.667 4.24 -1.34 1.76 2.28 0.284 -- -0.326 21.3 16.23 6679 -- --
203.39 0.664 4.32 -1.76 1.75 2 -- -1.91 -0.435 21.4 18.89 6573 -- --
205.27 0.667 4.24 -1.36 1.76 2.29 -- -- -0.313 21.4 16.17 6679 -- --
275.23 0.773 4.21 -1.34 -- 3.08 -- -2.89 -0.212 -- 23.81 830 -- --
314.5 0.831 4.1 -0.127 1.86 -- 0.417 -- 0.314 21.6 -- -- -- --
315.15 0.831 4.1 -0.142 1.86 -- -- -- 0.314 21.5 -- -- -- --
285.16 0.786 4.13 -0.845 -- 2.87 -- -- -0.0734 -- 23.59 797 -- --
236.5 0.716 4.21 -- 1.74 1.63 -- -- -0.128 21 21.8 6683 -- --
518.37 1.06 4.05 -0.128 -- -- -- -- 0.309 -- -- -- -- --
315.68 0.831 4.09 -- 1.86 -- -- -- 0.33 21.5 -- -- -- --
302.62 0.81 4.1 -- -- 2.69 -- -- 0.0573 -- 23.82 787 -- --
518.81 1.06 4.04 -- -- -- -- -- 0.324 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.94 temperature 10 720 > th dose dependent rect. 7 19
3 205.29 temperature 20 720 > th dose dependent rect. 7 19
13 206.70 temperature 20 720 > th dose dependent rect. 16 3
17 206.99 temperature 15 4320 > th dose dependent rect. 21 4
19 207.14 temperature 15 4320 > th dose dependent rect. 21 2
31 207.55 temperature 15 4320 > th dose dependent rect. 17 12
33 207.58 temperature 15 4320 > th dose dependent rect. 17 10
37 207.67 temperature 15 720 > th dose dependent sin 19 NA
39 207.68 temperature 10 720 > th dose dependent rect. 7 15
47 207.82 temperature 30 4320 < th dose dependent rect. 21 4
73 207.96 temperature 15 4320 > th dose dependent sin 13 NA
78 207.97 temperature 30 4320 < th dose dependent rect. 21 2
197 208.63 temperature 15 720 > th dose dependent rect. 14 6
230 208.73 temperature 30 4320 < th dose dependent rect. 17 12
232 208.74 temperature 30 4320 < th dose dependent rect. 17 10
401 209.33 temperature 30 4320 < th dose dependent sin 12 NA
556 209.94 temperature 10 720 > th dose dependent rect. 14 14
591 210.07 temperature 20 720 > th dose dependent rect. 17 1
635 210.26 temperature 20 4320 > th dose dependent rect. 17 2
789 210.80 temperature 20 4320 > th dose dependent no NA NA
810 210.86 temperature 20 4320 > th dose dependent rect. 20 23
840 210.97 temperature 20 4320 > th dose dependent rect. 3 23
866 211.03 temperature 15 4320 > th dose dependent rect. 4 1
904 211.12 temperature 20 4320 > th dose dependent rect. 24 23
964 211.31 temperature 30 720 < th dose dependent rect. 9 14
989 211.36 temperature 20 720 > th dose dependent rect. 14 22