Os11g0578100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ family protein.
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Os11g0578100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 398.72 | 0.938 | 2.98 | 1.38 | 0.182 | -1.15 | 0.641 | 13.2 | -0.209 | 6.96 | 30.1 | 97 | -- | -- |
| 421.16 | 0.956 | 3.12 | 0.405 | 0.0666 | -0.333 | 0.0746 | -- | -0.304 | 7.09 | 34.32 | 819 | -- | -- |
| 399.66 | 0.931 | 2.98 | 1.39 | 0.177 | -1.17 | -- | 13 | -0.214 | 7.84 | 30.12 | 97 | -- | -- |
| 421.14 | 0.956 | 3.12 | 0.413 | 0.0765 | -0.336 | -- | -- | -0.302 | 8.14 | 34.3 | 825 | -- | -- |
| 400.6 | 0.932 | 2.98 | 1.43 | -- | -1.26 | -- | 13.3 | -0.204 | -- | 30.2 | 117 | -- | -- |
| 423.8 | 0.965 | 3.11 | 0.361 | 0.132 | -- | 0.31 | -- | -0.272 | 8.72 | -- | -- | -- | -- |
| 424.1 | 0.964 | 3.11 | 0.37 | 0.134 | -- | -- | -- | -0.272 | 8.23 | -- | -- | -- | -- |
| 421.41 | 0.956 | 3.12 | 0.419 | -- | -0.365 | -- | -- | -0.305 | -- | 34.31 | 819 | -- | -- |
| 425.61 | 0.961 | 3.12 | -- | 0.0847 | -0.281 | -- | -- | -0.344 | 7.85 | 34.4 | 825 | -- | -- |
| 425.1 | 0.963 | 3.11 | 0.371 | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
| 427.72 | 0.967 | 3.12 | -- | 0.137 | -- | -- | -- | -0.313 | 8.03 | -- | -- | -- | -- |
| 425.96 | 0.961 | 3.13 | -- | -- | -0.314 | -- | -- | -0.346 | -- | 34.31 | 819 | -- | -- |
| 428.74 | 0.966 | 3.12 | -- | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 388.03 | temperature | 30 | 30 | > th | dose independent | rect. | 13 | 3 |
| 47 | 394.52 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 2 |
| 49 | 394.52 | wind | 1 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 55 | 395.10 | temperature | 30 | 30 | > th | dose independent | sin | 15 | NA |
| 58 | 395.30 | humidity | 50 | 90 | < th | dose dependent | rect. | 15 | 3 |
| 102 | 395.66 | humidity | 50 | 90 | < th | dose independent | rect. | 14 | 4 |
| 139 | 395.83 | humidity | 50 | 10 | < th | dose independent | rect. | 15 | 1 |
| 140 | 395.83 | humidity | 50 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 254 | 396.56 | temperature | 30 | 30 | < th | dose independent | sin | 15 | NA |
| 351 | 397.10 | humidity | 50 | 90 | < th | dose dependent | sin | 12 | NA |
| 447 | 398.14 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 452 | 398.26 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 2 |
| 473 | 398.67 | humidity | 50 | 90 | < th | dose independent | sin | 12 | NA |
| 489 | 399.25 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 5 |
| 491 | 399.25 | radiation | 1 | 90 | < th | dose dependent | rect. | 9 | 5 |
| 531 | 399.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 16 |
| 534 | 399.95 | temperature | 30 | 90 | > th | dose independent | no | NA | NA |
| 645 | 400.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 647 | 400.80 | temperature | 30 | 90 | < th | dose independent | no | NA | NA |
| 676 | 401.66 | humidity | 50 | 90 | > th | dose independent | sin | 12 | NA |
| 682 | 402.04 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 20 |
| 696 | 402.19 | radiation | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 706 | 402.19 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 716 | 402.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 12 |
| 735 | 402.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 758 | 402.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 799 | 402.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 865 | 403.53 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 6 |
| 867 | 403.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 920 | 403.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 936 | 404.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 7 |
| 938 | 404.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 950 | 404.21 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 4 |
| 954 | 404.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 959 | 404.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 962 | 404.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 963 | 404.32 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 5 |
| 973 | 404.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 993 | 404.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 22 |