FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0577800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 17 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0189) R2 : 0.0114
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0911 (0.0398) R2dN8 : 0.0147 R2N8 : 0.0114
σ : 0.356
deviance : 58.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.13 0.352 2.92 0.343 0.126 -0.45 -0.173 2.64 0.153 17.6 26.7 243 -- --
57.22 0.352 2.94 0.104 0.112 -0.203 0.0915 -- 0.127 17.2 23.11 304 -- --
56.15 0.349 2.91 0.36 0.123 -0.501 -- 3 0.147 17.3 27.2 249 -- --
57.22 0.352 2.94 0.0989 0.109 -0.198 -- -- 0.127 17.5 23.1 268 -- --
56.66 0.351 2.91 0.334 -- -0.416 -- 3.12 0.137 -- 27.6 249 -- --
57.71 0.356 2.95 0.0511 0.0191 -- -0.241 -- 0.0971 22.5 -- -- -- --
57.92 0.356 2.95 0.0615 0.0286 -- -- -- 0.0983 19.7 -- -- -- --
57.61 0.354 2.94 0.0896 -- -0.124 -- -- 0.119 -- 19 368 -- --
57.48 0.353 2.94 -- 0.1 -0.175 -- -- 0.111 17.6 23.7 259 -- --
57.97 0.356 2.94 0.0611 -- -- -- -- 0.0979 -- -- -- -- --
58.02 0.356 2.95 -- 0.0282 -- -- -- 0.0915 19.9 -- -- -- --
57.76 0.354 2.95 -- -- -0.115 -- -- 0.0927 -- 26.58 211 -- --
58.07 0.356 2.95 -- -- -- -- -- 0.0911 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.09 wind 9.0 1440 < th dose independent rect. 23 1
2 50.09 temperature 10.0 1440 > th dose independent rect. 23 1
5 50.09 temperature 30.0 1440 < th dose independent rect. 23 1
9 50.09 humidity 50.0 1440 > th dose independent rect. 23 1
19 50.09 humidity 90.0 30 < th dose independent rect. 22 1
20 50.09 atmosphere 995.0 1440 > th dose independent rect. 23 1
21 50.09 radiation 1.0 1440 < th dose independent rect. 23 1
41 50.09 temperature 10.0 1440 > th dose independent rect. 24 23
44 50.09 radiation 1.0 1440 < th dose dependent rect. 23 1
49 50.11 atmosphere 1005.0 30 > th dose dependent rect. 22 1
51 50.13 atmosphere 1005.0 30 > th dose independent rect. 22 1
52 50.13 wind 9.0 30 < th dose independent rect. 23 23
53 50.13 temperature 15.0 30 > th dose dependent rect. 22 1
56 50.14 temperature 25.0 30 > th dose independent rect. 22 1
58 50.15 wind 1.0 30 > th dose independent rect. 22 1
59 50.15 precipitation 0.1 30 < th dose independent rect. 22 1
60 50.15 precipitation 0.1 30 < th dose dependent rect. 22 1
63 50.17 wind 5.0 30 < th dose independent rect. 22 1
66 50.17 temperature 10.0 30 > th dose independent rect. 22 1
69 50.17 temperature 30.0 30 < th dose independent rect. 22 1
70 50.17 humidity 50.0 30 > th dose independent rect. 22 1
74 50.17 atmosphere 1010.0 30 < th dose independent rect. 22 1
76 50.17 radiation 1.0 30 < th dose independent rect. 22 1
81 50.17 temperature 10.0 30 > th dose independent rect. 23 23
82 50.17 humidity 90.0 30 < th dose dependent rect. 22 1
83 50.17 radiation 1.0 30 < th dose dependent rect. 22 1
88 50.18 wind 9.0 30 < th dose dependent rect. 22 1
92 50.21 humidity 50.0 30 > th dose dependent rect. 22 1
94 50.22 wind 1.0 30 > th dose dependent rect. 22 1
101 50.33 radiation 30.0 4320 < th dose dependent rect. 21 1
108 50.36 atmosphere 1015.0 30 < th dose dependent rect. 22 1
111 50.39 temperature 20.0 30 > th dose dependent rect. 20 1
114 50.40 humidity 90.0 30 < th dose independent rect. 20 1
116 50.40 atmosphere 1005.0 30 > th dose dependent rect. 20 1
119 50.41 temperature 25.0 30 > th dose independent rect. 20 1
120 50.41 temperature 10.0 1440 > th dose independent rect. 21 1
123 50.41 temperature 30.0 1440 < th dose independent rect. 21 1
127 50.41 humidity 50.0 1440 > th dose independent rect. 21 1
133 50.41 atmosphere 995.0 1440 > th dose independent rect. 21 1
134 50.41 radiation 1.0 1440 < th dose independent rect. 21 1
154 50.41 temperature 10.0 1440 > th dose independent rect. 22 23
160 50.43 temperature 30.0 30 < th dose dependent rect. 22 1
162 50.44 atmosphere 1005.0 30 > th dose independent rect. 20 1
166 50.46 wind 3.0 30 > th dose independent rect. 20 1
169 50.47 wind 5.0 30 < th dose independent rect. 20 1
172 50.47 temperature 10.0 30 > th dose independent rect. 20 1
174 50.47 temperature 30.0 30 < th dose independent rect. 20 1
175 50.47 humidity 50.0 30 > th dose independent rect. 20 1
178 50.47 atmosphere 995.0 30 > th dose independent rect. 20 1
180 50.47 atmosphere 1010.0 30 < th dose independent rect. 20 1
182 50.47 radiation 1.0 30 < th dose independent rect. 20 1
187 50.47 precipitation 0.1 30 < th dose independent rect. 20 1
188 50.47 temperature 10.0 30 > th dose independent rect. 21 23
189 50.47 radiation 1.0 30 < th dose dependent rect. 20 1
194 50.47 precipitation 0.1 30 < th dose dependent rect. 20 1
196 50.51 wind 9.0 30 < th dose dependent rect. 20 1
197 50.52 wind 1.0 30 > th dose dependent rect. 20 1
198 50.52 humidity 50.0 30 > th dose dependent rect. 20 1
203 50.59 humidity 90.0 30 < th dose dependent rect. 20 1
211 50.65 atmosphere 1015.0 30 < th dose dependent rect. 20 1
212 50.66 temperature 25.0 30 > th dose independent rect. 20 3
223 50.83 temperature 25.0 30 > th dose dependent rect. 20 3
260 51.10 temperature 30.0 30 < th dose dependent rect. 20 1
321 51.83 atmosphere 1005.0 30 > th dose dependent rect. 20 3
337 52.34 wind 9.0 30 < th dose independent rect. 21 23
348 52.76 temperature 25.0 10 < th dose dependent rect. 16 1
354 52.90 temperature 25.0 10 > th dose dependent rect. 20 9
363 52.94 temperature 25.0 10 < th dose dependent rect. 14 3
388 53.24 atmosphere 1005.0 30 > th dose dependent rect. 15 8
400 53.45 atmosphere 995.0 30 > th dose independent rect. 21 23
401 53.45 atmosphere 995.0 30 > th dose independent rect. 23 23
414 53.52 precipitation 0.1 30 < th dose independent rect. 21 23
417 53.52 precipitation 0.1 30 < th dose dependent rect. 21 23
419 53.58 humidity 90.0 30 < th dose independent rect. 20 3
422 53.62 atmosphere 1005.0 30 > th dose independent rect. 20 3
425 53.64 humidity 80.0 30 > th dose independent rect. 20 3
426 53.64 precipitation 0.1 30 < th dose independent rect. 23 23
427 53.64 precipitation 0.1 30 < th dose dependent rect. 23 23
431 53.70 temperature 10.0 30 > th dose dependent rect. 23 21
441 53.82 temperature 25.0 90 < th dose independent rect. 14 1
458 53.97 temperature 25.0 720 > th dose dependent rect. 23 10
464 54.03 atmosphere 1005.0 30 > th dose dependent rect. 15 1
471 54.08 wind 5.0 30 < th dose independent rect. 20 3
491 54.21 temperature 25.0 30 > th dose independent rect. 20 11
506 54.30 radiation 10.0 10 > th dose independent rect. 6 1
533 54.30 radiation 10.0 10 > th dose dependent rect. 6 1
569 54.37 wind 7.0 30 < th dose dependent rect. 20 3
589 54.47 precipitation 0.1 1440 < th dose independent rect. 23 1
590 54.47 temperature 25.0 720 > th dose independent rect. 23 10
591 54.47 precipitation 0.1 1440 < th dose dependent rect. 23 1
605 54.51 humidity 80.0 30 > th dose independent rect. 14 9
623 54.55 temperature 25.0 10 < th dose dependent rect. 12 5
625 54.56 wind 7.0 10 > th dose independent rect. 15 1
636 54.59 wind 1.0 30 > th dose independent rect. 20 3
637 54.59 humidity 80.0 30 > th dose independent rect. 12 11
654 54.61 temperature 10.0 30 > th dose dependent rect. 23 23
664 54.64 atmosphere 995.0 30 > th dose independent rect. 23 21
666 54.66 temperature 10.0 1440 > th dose independent rect. 21 3
669 54.66 temperature 30.0 1440 < th dose independent rect. 21 3
673 54.66 humidity 50.0 1440 > th dose independent rect. 21 3
679 54.66 atmosphere 995.0 1440 > th dose independent rect. 21 3
680 54.66 radiation 1.0 1440 < th dose independent rect. 21 3
700 54.66 temperature 10.0 1440 > th dose independent rect. 24 21
703 54.66 radiation 10.0 1440 < th dose dependent rect. 21 3
719 54.69 temperature 25.0 90 > th dose independent rect. 23 20
730 54.72 wind 9.0 30 < th dose independent rect. 23 21
731 54.73 precipitation 0.1 30 < th dose independent rect. 20 3
733 54.73 temperature 25.0 270 > th dose independent rect. 23 18
737 54.73 precipitation 0.1 30 < th dose dependent rect. 20 3
738 54.74 temperature 10.0 30 > th dose independent rect. 20 3
741 54.74 temperature 30.0 30 < th dose independent rect. 20 3
742 54.74 humidity 50.0 30 > th dose independent rect. 20 3
746 54.74 atmosphere 1010.0 30 < th dose independent rect. 20 3
748 54.74 radiation 1.0 30 < th dose independent rect. 20 3
753 54.74 temperature 10.0 30 > th dose independent rect. 23 21
757 54.74 radiation 1.0 30 < th dose dependent rect. 20 3
784 54.81 precipitation 0.1 30 < th dose independent rect. 23 21
786 54.81 precipitation 0.1 30 < th dose dependent rect. 23 21
826 54.91 atmosphere 1015.0 30 < th dose independent rect. 23 23
845 54.95 humidity 50.0 30 > th dose dependent rect. 20 3
853 54.97 temperature 25.0 270 < th dose dependent rect. 12 1
866 55.01 temperature 10.0 10 > th dose dependent rect. 10 10
867 55.01 temperature 10.0 10 > th dose dependent rect. 8 12
877 55.04 precipitation 0.1 1440 < th dose independent rect. 21 3
880 55.04 wind 7.0 10 > th dose dependent rect. 15 1
883 55.04 precipitation 0.1 1440 < th dose dependent rect. 21 3
907 55.08 humidity 50.0 30 > th dose independent rect. 23 23
910 55.09 temperature 25.0 270 < th dose independent rect. 11 5
920 55.11 atmosphere 1005.0 270 > th dose independent rect. 19 1
930 55.13 humidity 50.0 30 > th dose independent rect. 23 21
977 55.19 atmosphere 1010.0 10 < th dose independent rect. 23 21
995 55.22 temperature 10.0 720 > th dose dependent rect. 8 1
1000 55.23 humidity 50.0 30 > th dose independent rect. 21 23