FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0577700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.12 (0.036) R2 : 0.622
β1 : 2.41 (0.133) R2dD : 0.292 R2D : 0.111
β2 : 1.51 (0.0928) R2dC : 0.214 R2C : 0.139
β3 : 10.4 (1.14) R2dE : 0.359 R2E : -0.306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 46.7 (6.27) R2dD*E : 0.248 R2D*E : -0.281
γ1 : 1.17 (0.0761) R2dN8 : 0.273 R2N8 : 0.107
σ : 0.665
deviance : 203.89
__
_____
C
peak time of C : 18.7
E
wheather : radiation
threshold : 6.483
memory length : 125
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.22
open length of G : 1.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.05 0.654 4.11 2.44 1.48 9.89 2.12 45.4 1.19 19 7.328 125 8.2 1.93
224.34 0.698 4.08 2.25 1.49 1.9 1.61 -- 1.19 18.8 20.81 150 8.58 0.933
203.89 0.665 4.12 2.41 1.51 10.4 -- 46.7 1.17 18.7 6.483 125 8.22 1.88
229.04 0.705 4.06 2.27 1.46 2.73 -- -- 1.22 18.8 10.47 147 8.48 0.822
316.75 0.829 4.11 2.35 -- 11.3 -- 54.6 1.15 -- 5.702 125 8.23 1.87
236.32 0.721 4.08 2.22 1.42 -- 1.86 -- 1.17 18.8 -- -- -- --
244.86 0.733 4.07 2.19 1.43 -- -- -- 1.17 18.6 -- -- -- --
338.88 0.857 4.08 2.21 -- 2.66 -- -- 1.14 -- 8.659 145 8.78 0.0492
354.62 0.877 4.12 -- 1.43 2.94 -- -- 0.989 18.7 9.244 146 8.8 0.0166
351.25 0.876 4.04 2.15 -- -- -- -- 1.14 -- -- -- -- --
370.82 0.901 4.13 -- 1.4 -- -- -- 0.93 18.7 -- -- -- --
462.85 1 4.09 -- -- 2.22 -- -- 0.92 -- 9.396 152 8.8 0.05
473.4 1.02 4.1 -- -- -- -- -- 0.906 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.24 radiation 10.0 90 < th dose dependent rect. 8 2
2 204.28 wind 1.0 90 < th dose dependent rect. 8 1
3 204.64 humidity 80.0 30 > th dose dependent rect. 8 2
8 207.26 precipitation 0.1 4320 < th dose independent rect. 4 5
9 207.26 precipitation 0.1 4320 < th dose dependent rect. 4 5
10 207.33 precipitation 0.1 4320 > th dose independent rect. 4 5
14 207.39 precipitation 0.1 4320 > th dose dependent rect. 4 5
28 207.71 precipitation 0.1 4320 > th dose independent rect. 4 2
37 207.83 wind 1.0 90 < th dose independent rect. 8 1
38 207.83 precipitation 0.1 4320 > th dose dependent rect. 4 2
42 208.01 precipitation 0.1 4320 < th dose independent rect. 3 10
43 208.01 precipitation 0.1 4320 < th dose dependent rect. 3 10
48 208.09 precipitation 0.1 4320 < th dose independent rect. 4 2
49 208.09 precipitation 0.1 4320 < th dose dependent rect. 4 2
52 208.13 precipitation 0.1 4320 > th dose independent rect. 3 10
62 208.55 humidity 90.0 4320 > th dose dependent rect. 8 1
64 208.84 precipitation 0.1 4320 < th dose independent rect. 1 16
66 208.84 precipitation 0.1 4320 < th dose dependent rect. 1 16
67 208.88 humidity 80.0 10 > th dose independent rect. 10 1
69 208.91 precipitation 0.1 4320 > th dose independent rect. 1 16
70 208.96 precipitation 0.1 4320 > th dose independent rect. 7 1
71 208.96 precipitation 0.1 4320 > th dose dependent rect. 7 1
75 209.00 precipitation 0.1 4320 < th dose independent rect. 7 1
76 209.00 precipitation 0.1 4320 < th dose dependent rect. 7 1
84 209.22 precipitation 0.1 4320 > th dose dependent rect. 1 16
93 209.43 precipitation 0.1 4320 > th dose dependent rect. 1 9
135 210.22 precipitation 0.1 14400 > th dose independent rect. 17 1
144 210.28 precipitation 0.1 4320 > th dose independent rect. 1 9
147 210.33 precipitation 0.1 14400 < th dose independent rect. 17 1
148 210.33 precipitation 0.1 14400 < th dose dependent rect. 17 1
151 210.37 precipitation 0.1 4320 < th dose independent rect. 1 9
152 210.37 precipitation 0.1 4320 < th dose dependent rect. 1 9
179 210.65 precipitation 0.1 4320 < th dose independent rect. 1 12
181 210.65 precipitation 0.1 4320 < th dose dependent rect. 1 12
183 210.68 humidity 80.0 1440 < th dose independent rect. 11 1
222 211.03 precipitation 0.1 14400 < th dose independent rect. 3 17
224 211.03 precipitation 0.1 14400 < th dose dependent rect. 3 17
227 211.08 precipitation 0.1 14400 > th dose independent rect. 3 17
256 211.29 precipitation 0.1 4320 < th dose independent sin 4 NA
257 211.29 precipitation 0.1 4320 < th dose dependent sin 4 NA
265 211.36 precipitation 0.1 4320 > th dose independent sin 4 NA
272 211.44 precipitation 0.1 14400 < th dose independent rect. 1 19
273 211.44 precipitation 0.1 14400 < th dose dependent rect. 1 19
274 211.47 precipitation 0.1 14400 > th dose independent rect. 1 19
290 211.62 wind 3.0 14400 < th dose dependent rect. 1 2
295 211.71 humidity 80.0 1440 > th dose independent rect. 11 1
300 211.73 precipitation 0.1 14400 < th dose independent sin 2 NA
302 211.73 precipitation 0.1 14400 < th dose dependent sin 2 NA
309 211.83 precipitation 0.1 14400 > th dose independent sin 2 NA
311 211.84 precipitation 0.1 4320 > th dose dependent sin 5 NA
318 211.92 precipitation 0.1 14400 < th dose independent rect. 7 10
319 211.92 precipitation 0.1 14400 < th dose dependent rect. 7 10
327 212.00 humidity 80.0 1440 < th dose independent rect. 4 8
329 212.05 precipitation 0.1 14400 > th dose dependent sin 3 NA
332 212.08 precipitation 0.1 14400 > th dose independent rect. 7 10
333 212.08 precipitation 0.1 14400 > th dose dependent rect. 17 1
371 212.45 precipitation 0.1 14400 > th dose dependent rect. 1 19
388 212.57 precipitation 0.1 14400 < th dose independent rect. 9 8
390 212.57 precipitation 0.1 14400 < th dose dependent rect. 9 8
392 212.59 precipitation 0.1 14400 < th dose independent rect. 14 3
393 212.59 precipitation 0.1 14400 < th dose dependent rect. 14 3
400 212.62 precipitation 0.1 14400 > th dose independent rect. 9 8
408 212.65 humidity 80.0 1440 > th dose independent rect. 4 8
410 212.66 precipitation 0.1 14400 > th dose independent rect. 14 3
422 212.69 precipitation 0.1 14400 > th dose dependent rect. 14 3
429 212.73 humidity 90.0 4320 > th dose dependent rect. 7 7
437 212.81 wind 3.0 14400 < th dose independent rect. 22 9
449 212.92 humidity 80.0 1440 < th dose independent rect. 8 4
489 213.20 wind 3.0 14400 > th dose independent rect. 22 10
537 213.43 humidity 80.0 10 > th dose independent rect. 8 3
538 213.43 wind 3.0 14400 < th dose dependent rect. 1 6
542 213.45 wind 3.0 14400 < th dose independent rect. 24 3
549 213.47 wind 1.0 14400 > th dose dependent rect. 1 1
552 213.48 precipitation 0.1 14400 < th dose independent rect. 12 5
553 213.48 precipitation 0.1 14400 < th dose dependent rect. 12 5
570 213.56 precipitation 0.1 14400 > th dose independent rect. 12 5
596 213.66 wind 3.0 14400 < th dose independent rect. 23 5
604 213.68 humidity 80.0 1440 > th dose independent rect. 8 4
615 213.74 humidity 80.0 4320 > th dose independent rect. 9 1
637 213.91 humidity 90.0 14400 > th dose independent rect. 7 3
647 213.95 humidity 70.0 1440 > th dose dependent rect. 9 2
660 214.01 humidity 60.0 1440 > th dose dependent rect. 2 10
669 214.07 humidity 90.0 14400 > th dose independent rect. 7 1
682 214.13 humidity 70.0 1440 > th dose dependent rect. 8 4
710 214.23 precipitation 0.1 14400 > th dose dependent rect. 12 5
776 214.55 wind 3.0 14400 > th dose independent rect. 5 2
777 214.55 wind 3.0 14400 > th dose independent rect. 24 2
790 214.59 wind 3.0 14400 < th dose independent rect. 5 2
800 214.64 wind 3.0 14400 > th dose independent rect. 23 5
806 214.68 precipitation 0.1 14400 < th dose independent rect. 15 5
807 214.68 precipitation 0.1 14400 < th dose independent rect. 13 7
809 214.68 precipitation 0.1 14400 < th dose dependent rect. 15 5
810 214.68 precipitation 0.1 14400 < th dose dependent rect. 13 7
812 214.69 precipitation 0.1 14400 > th dose independent rect. 15 5
824 214.72 precipitation 0.1 14400 > th dose independent rect. 13 7
834 214.75 wind 3.0 14400 < th dose dependent rect. 4 3
879 214.86 humidity 90.0 4320 < th dose dependent rect. 10 1
881 214.87 humidity 80.0 14400 > th dose independent rect. 13 1
924 215.00 wind 1.0 1440 < th dose independent rect. 9 10
948 215.08 humidity 50.0 4320 > th dose dependent rect. 10 1
978 215.20 wind 1.0 14400 > th dose dependent rect. 23 9
986 215.23 radiation 1.0 1440 < th dose independent rect. 6 2
997 215.24 radiation 1.0 1440 > th dose independent rect. 6 2