FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0573900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0182) R2 : 6e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.002 (0.0382) R2dN8 : 7.75e-06 R2N8 : 6e-06
σ : 0.342
deviance : 53.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.18 0.323 2.96 -0.0798 0.133 0.459 -0.307 -1.09 0.00994 11.8 1013 795 -- --
47.46 0.321 2.97 -0.0957 0.128 0.977 -0.301 -- 0.00713 11.7 1013 1030 -- --
47.56 0.321 2.96 -0.0931 0.129 0.55 -- -1.08 0.00941 11.9 1013 871 -- --
47.83 0.322 2.97 -0.106 0.129 1.02 -- -- 0.00716 11.9 1014 1018 -- --
48.6 0.325 2.97 -0.0938 -- 0.642 -- -1.06 0.00795 -- 1013 1018 -- --
50.83 0.334 2.97 -0.142 0.145 -- -0.412 -- -0.0125 11.8 -- -- -- --
51.56 0.336 2.97 -0.158 0.147 -- -- -- -0.0141 12 -- -- -- --
48.87 0.326 2.97 -0.108 -- 1.08 -- -- 0.00687 -- 1014 1075 -- --
48.12 0.323 2.96 -- 0.13 1.06 -- -- 0.0195 12 1014 1009 -- --
52.93 0.34 2.97 -0.163 -- -- -- -- -0.0161 -- -- -- -- --
52.23 0.338 2.97 -- 0.149 -- -- -- 0.00358 12 -- -- -- --
49.17 0.327 2.97 -- -- 1.12 -- -- 0.0188 -- 1014 1064 -- --
53.63 0.342 2.97 -- -- -- -- -- 0.002 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.87 temperature 10.0 1440 > th dose independent rect. 21 1
4 44.87 temperature 30.0 1440 < th dose independent rect. 21 1
8 44.87 humidity 50.0 1440 > th dose independent rect. 21 1
14 44.87 atmosphere 995.0 1440 > th dose independent rect. 21 1
15 44.87 radiation 1.0 1440 < th dose independent rect. 21 1
35 44.87 temperature 10.0 1440 > th dose independent rect. 22 23
38 44.91 radiation 40.0 1440 < th dose dependent rect. 21 1
40 44.93 temperature 25.0 30 > th dose independent rect. 20 1
41 44.95 atmosphere 1005.0 30 > th dose dependent rect. 20 1
45 44.99 temperature 20.0 30 > th dose dependent rect. 20 1
47 45.00 humidity 80.0 30 > th dose independent rect. 20 1
49 45.01 wind 3.0 30 > th dose independent rect. 20 1
54 45.04 humidity 90.0 30 < th dose independent rect. 20 1
56 45.05 atmosphere 1005.0 30 > th dose independent rect. 20 1
60 45.08 wind 5.0 30 < th dose independent rect. 20 1
66 45.11 temperature 10.0 30 > th dose independent rect. 20 1
68 45.11 temperature 30.0 30 < th dose independent rect. 20 1
69 45.11 humidity 50.0 30 > th dose independent rect. 20 1
73 45.11 atmosphere 1010.0 30 < th dose independent rect. 20 1
75 45.11 radiation 1.0 30 < th dose independent rect. 20 1
80 45.11 precipitation 0.1 30 < th dose independent rect. 20 1
81 45.11 temperature 10.0 30 > th dose independent rect. 21 23
82 45.11 wind 1.0 30 > th dose dependent rect. 20 1
83 45.11 radiation 1.0 30 < th dose dependent rect. 20 1
88 45.11 precipitation 0.1 30 < th dose dependent rect. 20 1
89 45.12 humidity 50.0 30 > th dose dependent rect. 20 1
93 45.16 wind 9.0 30 < th dose dependent rect. 20 1
99 45.39 humidity 90.0 30 < th dose dependent rect. 20 1
100 45.39 atmosphere 1015.0 30 < th dose dependent rect. 20 1
102 45.46 wind 9.0 1440 < th dose independent rect. 21 1
104 45.64 temperature 30.0 30 < th dose dependent rect. 20 1
153 46.50 temperature 30.0 90 < th dose dependent rect. 11 1
159 46.56 atmosphere 995.0 4320 > th dose independent rect. 12 1
160 46.56 radiation 1.0 270 < th dose independent rect. 8 1
161 46.56 radiation 1.0 270 < th dose dependent rect. 8 1
175 46.80 atmosphere 1010.0 10 > th dose independent rect. 11 1
219 46.80 temperature 30.0 270 < th dose dependent rect. 8 4
227 46.82 wind 1.0 10 > th dose dependent rect. 11 1
228 46.84 wind 1.0 90 > th dose dependent rect. 11 1
229 46.86 wind 9.0 30 < th dose independent rect. 21 23
231 46.88 atmosphere 1015.0 720 < th dose independent rect. 12 21
244 46.91 atmosphere 1005.0 10 > th dose dependent rect. 11 1
247 46.93 temperature 25.0 270 < th dose dependent rect. 8 1
249 46.94 atmosphere 1015.0 720 < th dose independent rect. 12 23
251 46.96 wind 9.0 90 > th dose dependent rect. 10 1
253 46.97 atmosphere 1015.0 720 < th dose independent rect. 21 20
257 47.00 atmosphere 1015.0 720 < th dose independent rect. 22 18
260 47.04 atmosphere 1015.0 720 < th dose independent rect. 12 15
261 47.05 atmosphere 1015.0 720 < th dose independent rect. 22 9
263 47.05 atmosphere 995.0 30 > th dose dependent rect. 11 1
264 47.06 atmosphere 1015.0 720 < th dose independent rect. 21 12
292 47.14 wind 9.0 720 > th dose independent rect. 22 12
297 47.15 wind 9.0 720 > th dose independent rect. 1 9
304 47.16 wind 9.0 270 > th dose independent rect. 9 1
359 47.20 atmosphere 1010.0 90 > th dose dependent rect. 10 13
362 47.22 atmosphere 1015.0 720 < th dose independent rect. 19 14
365 47.23 wind 7.0 90 > th dose independent rect. 11 1
368 47.23 humidity 90.0 14400 > th dose dependent rect. 20 9
374 47.25 temperature 30.0 10 < th dose independent rect. 11 1
382 47.26 atmosphere 1010.0 270 > th dose dependent rect. 10 10
429 47.34 atmosphere 1005.0 10 > th dose dependent rect. 11 19
437 47.36 atmosphere 1015.0 30 < th dose independent rect. 12 23
450 47.38 atmosphere 1015.0 720 < th dose independent rect. 19 23
470 47.40 temperature 30.0 720 < th dose dependent rect. 24 5
474 47.41 atmosphere 1015.0 1440 < th dose independent rect. 19 2
493 47.41 atmosphere 1010.0 720 > th dose dependent rect. 10 3
500 47.42 atmosphere 1015.0 1440 > th dose independent rect. 19 3
501 47.42 atmosphere 1015.0 1440 < th dose independent rect. 17 6
502 47.42 atmosphere 1015.0 1440 > th dose independent rect. 18 7
513 47.43 atmosphere 1015.0 1440 < th dose independent rect. 18 4
530 47.43 temperature 20.0 720 < th dose dependent rect. 1 12
534 47.43 atmosphere 1005.0 10 > th dose dependent rect. 11 13
535 47.44 atmosphere 1015.0 720 > th dose independent sin 7 NA
536 47.44 atmosphere 1015.0 720 > th dose independent rect. 23 3
540 47.44 atmosphere 1015.0 720 > th dose independent rect. 22 6
567 47.44 atmosphere 1015.0 720 > th dose dependent sin 8 NA
569 47.44 atmosphere 1010.0 90 > th dose dependent sin 21 NA
575 47.44 atmosphere 1015.0 720 > th dose dependent rect. 23 2
578 47.44 atmosphere 1015.0 720 > th dose dependent rect. 22 5
584 47.44 atmosphere 1015.0 720 > th dose dependent rect. 1 21
585 47.44 atmosphere 1015.0 720 > th dose dependent rect. 22 23
589 47.45 atmosphere 1015.0 720 < th dose independent sin 7 NA
601 47.45 atmosphere 1015.0 720 > th dose independent rect. 2 19
603 47.45 atmosphere 1010.0 10 > th dose dependent sin 20 NA
654 47.46 atmosphere 1005.0 10 > th dose dependent rect. 11 10
656 47.46 temperature 30.0 720 < th dose dependent rect. 24 12
658 47.46 temperature 10.0 90 > th dose dependent rect. 12 23
659 47.47 wind 3.0 10 > th dose independent rect. 11 1
681 47.47 atmosphere 1015.0 1440 > th dose dependent rect. 21 1
704 47.48 temperature 15.0 720 < th dose independent sin 7 NA
709 47.48 atmosphere 1015.0 1440 < th dose independent sin 16 NA
718 47.48 temperature 15.0 720 < th dose independent rect. 24 19
727 47.48 temperature 15.0 4320 < th dose dependent rect. 14 1
735 47.48 wind 1.0 10 > th dose dependent rect. 8 4
736 47.48 temperature 15.0 4320 < th dose dependent rect. 12 4
746 47.49 temperature 15.0 720 < th dose independent sin 4 NA
748 47.49 temperature 15.0 720 < th dose independent no NA NA
749 47.49 atmosphere 1015.0 1440 > th dose independent sin 16 NA
752 47.49 temperature 15.0 720 < th dose independent rect. 1 4
859 47.49 temperature 15.0 720 < th dose independent rect. 4 21
872 47.49 temperature 15.0 720 < th dose independent rect. 9 22
897 47.49 temperature 15.0 720 < th dose dependent sin 4 NA
909 47.49 atmosphere 1005.0 10 > th dose dependent rect. 11 4
928 47.49 atmosphere 1015.0 720 > th dose dependent rect. 2 19
938 47.50 temperature 15.0 720 < th dose independent rect. 3 2
950 47.50 temperature 20.0 90 < th dose independent rect. 9 6
995 47.50 temperature 15.0 720 < th dose dependent rect. 3 2