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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0570000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.79 (0.0963) R2 : 0.654
β1 : 0.153 (0.37) R2dD : 0.000514 R2D : -0.217
β2 : 2.94 (0.132) R2dC : 0.383 R2C : 0.252
β3 : -8.13 (0.896) R2dE : 1.04 R2E : -0.419
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -19.9 (2.44) R2dD*E : 0.692 R2D*E : -0.862
γ1 : -0.247 (0.128) R2dN8 : 0.0051 R2N8 : -0.165
σ : 0.967
deviance : 431.07
__
_____
C
peak time of C : 15.8
E
wheather : radiation
threshold : 11.57
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.07
open length of G : 2.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
430.94 0.975 6.79 0.158 2.93 -8.15 -0.214 -20 -0.247 15.8 11.78 4320 3.07 2.03
502.05 1.05 6.2 -2.62 2.91 -0.47 0.205 -- -0.525 15.8 6.183 4336 3.2 2.4
431.07 0.967 6.79 0.153 2.94 -8.13 -- -19.9 -0.247 15.8 11.57 4320 3.07 2.02
477.32 1.02 6.2 -2.61 2.91 -0.56 -- -- -0.521 15.7 1.683 4379 3.37 2.57
820.57 1.33 6.72 0.0538 -- -8.28 -- -19.4 -0.396 -- 52.9 4320 3.15 2.03
508.73 1.06 6.2 -2.65 3.1 -- 0.342 -- -0.509 15.8 -- -- -- --
509.06 1.06 6.2 -2.64 3.1 -- -- -- -0.507 15.8 -- -- -- --
868.14 1.38 6.2 -2.65 -- -2.03 -- -- -0.636 -- 54.62 4426 3.19 2.18
621.16 1.16 5.98 -- 2.65 -1.31 -- -- -0.147 15.5 12.19 5803 3.43 2.55
1037.07 1.5 6.19 -2.77 -- -- -- -- -0.59 -- -- -- -- --
692.78 1.23 6.14 -- 3.15 -- -- -- -0.213 15.8 -- -- -- --
838.61 1.35 6.11 -- -- -2.57 -- -- -0.239 -- 68.4 5917 0.0167 7.16
1239.22 1.64 6.12 -- -- -- -- -- -0.283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 432.50 wind 1 43200 < th dose independent rect. 12 1
2 433.51 wind 1 43200 > th dose independent rect. 12 1
3 434.73 wind 1 43200 < th dose independent rect. 10 3
4 435.15 wind 1 43200 > th dose independent rect. 10 3
8 435.94 humidity 80 14400 > th dose dependent rect. 5 2
10 436.23 humidity 50 14400 > th dose dependent rect. 5 2
13 436.52 wind 1 43200 < th dose dependent rect. 10 3
16 437.03 wind 1 14400 > th dose independent rect. 24 2
26 438.17 radiation 10 43200 < th dose dependent rect. 18 12
28 438.20 radiation 40 43200 < th dose dependent rect. 18 12
38 439.78 wind 1 14400 < th dose independent rect. 24 2
39 439.94 radiation 10 4320 < th dose dependent rect. 3 2
54 441.33 wind 3 14400 < th dose dependent rect. 1 1
60 441.72 wind 3 43200 < th dose dependent rect. 23 3
61 441.86 temperature 20 90 < th dose independent rect. 11 18
63 442.21 temperature 20 90 > th dose independent rect. 5 23
69 442.49 temperature 20 90 > th dose independent rect. 21 23
74 442.72 wind 1 43200 > th dose independent rect. 6 8
75 442.77 wind 1 43200 < th dose independent rect. 6 8
90 443.49 temperature 20 1440 > th dose independent rect. 6 1
99 443.92 temperature 20 90 < th dose independent rect. 16 13
108 444.34 humidity 90 43200 < th dose dependent rect. 1 1
111 444.37 humidity 70 43200 > th dose dependent rect. 1 1
118 444.60 temperature 20 1440 < th dose independent rect. 6 1
121 444.77 wind 1 43200 < th dose dependent rect. 6 8
137 445.03 wind 3 14400 < th dose independent rect. 1 14
153 445.28 wind 3 14400 > th dose independent rect. 1 14
207 445.85 wind 3 14400 < th dose dependent rect. 4 10
211 445.88 radiation 40 43200 < th dose dependent rect. 3 3
217 445.90 wind 3 14400 < th dose dependent rect. 24 15
366 446.83 radiation 40 43200 < th dose dependent rect. 20 10
385 446.91 humidity 90 43200 < th dose dependent rect. 24 7
469 447.40 radiation 1 43200 > th dose dependent rect. 18 12
476 447.43 temperature 20 90 < th dose independent sin 14 NA
507 447.62 wind 3 43200 < th dose dependent rect. 5 2
544 447.89 radiation 10 43200 < th dose independent rect. 16 15
548 447.92 wind 3 14400 < th dose independent sin 4 NA
583 448.12 wind 3 14400 > th dose independent sin 4 NA
595 448.19 wind 3 14400 < th dose dependent sin 4 NA
617 448.32 humidity 90 14400 < th dose dependent rect. 6 1
646 448.46 temperature 20 90 < th dose independent rect. 16 19
676 448.55 wind 1 43200 > th dose independent rect. 6 18
729 448.79 wind 3 43200 < th dose dependent rect. 5 21
742 448.87 temperature 20 1440 < th dose independent rect. 5 3
771 448.98 atmosphere 1015 14400 < th dose independent rect. 13 1
787 449.02 wind 1 14400 > th dose dependent rect. 1 14
789 449.04 atmosphere 1015 14400 < th dose independent rect. 13 8
794 449.05 wind 1 14400 > th dose dependent rect. 23 16
797 449.06 atmosphere 1015 43200 > th dose dependent rect. 11 1
804 449.08 wind 1 43200 < th dose independent rect. 6 18
806 449.09 wind 3 43200 > th dose independent rect. 6 1
809 449.11 atmosphere 1015 14400 > th dose independent rect. 13 1
810 449.11 atmosphere 1015 14400 > th dose independent rect. 12 3
848 449.21 wind 3 43200 < th dose independent rect. 6 1
857 449.24 humidity 90 43200 < th dose independent rect. 2 3
870 449.27 wind 9 14400 < th dose dependent sin 5 NA
872 449.28 atmosphere 1015 14400 > th dose independent rect. 12 9
938 449.52 atmosphere 1015 14400 < th dose independent rect. 19 1
980 449.65 radiation 1 43200 > th dose dependent rect. 5 1
1000 449.71 radiation 20 14400 < th dose independent rect. 3 3