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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0568200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.027) R2 : 0.00357
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0725 (0.0567) R2dN8 : 0.00461 R2N8 : 0.00357
σ : 0.508
deviance : 118.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.03 0.504 2.93 0.179 0.154 0.263 0.181 1.45 0.0808 4.18 5 4 -- --
116.98 0.508 2.93 0.155 0.0974 -0.0674 0.222 -- 0.0865 8.72 5 4 -- --
116.35 0.506 2.93 0.172 0.103 -0.0645 -- 0.338 0.0903 7.95 0.238 160 -- --
116.44 0.506 2.94 0.15 0.225 0.169 -- -- 0.0761 0.873 0.04221 126 -- --
116.59 0.503 2.93 0.173 -- -0.0593 -- 0.32 0.0945 -- 0.18 131 -- --
117.12 0.507 2.93 0.16 0.0805 -- -0.155 -- 0.0879 3.75 -- -- -- --
117.16 0.507 2.93 0.162 0.0854 -- -- -- 0.0887 4.84 -- -- -- --
117.15 0.504 2.93 0.171 -- -0.0652 -- -- 0.0934 -- 0.04819 153 -- --
117.03 0.507 2.94 -- 0.24 0.18 -- -- 0.0586 0.82 0.04221 126 -- --
117.55 0.507 2.93 0.166 -- -- -- -- 0.0909 -- -- -- -- --
117.86 0.508 2.94 -- 0.0884 -- -- -- 0.0706 4.79 -- -- -- --
117.93 0.506 2.93 -- -- -0.0648 -- -- 0.0932 -- 0.04536 153 -- --
118.27 0.508 2.94 -- -- -- -- -- 0.0725 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.83 temperature 25.0 30 > th dose independent rect. 1 4
2 109.85 temperature 25.0 30 > th dose dependent rect. 1 4
6 110.50 temperature 25.0 90 > th dose dependent rect. 3 1
7 110.54 wind 3.0 10 < th dose dependent rect. 4 1
11 110.66 temperature 25.0 90 > th dose independent rect. 3 1
13 110.71 wind 7.0 1440 < th dose independent rect. 5 1
15 110.71 temperature 10.0 1440 > th dose independent rect. 5 1
18 110.71 temperature 30.0 1440 < th dose independent rect. 5 1
22 110.71 humidity 50.0 1440 > th dose independent rect. 5 1
31 110.71 atmosphere 995.0 1440 > th dose independent rect. 5 1
32 110.71 atmosphere 1015.0 1440 < th dose independent rect. 5 1
33 110.71 radiation 20.0 1440 < th dose independent rect. 5 1
42 110.71 temperature 10.0 1440 > th dose independent rect. 6 23
51 110.80 wind 3.0 10 < th dose independent rect. 4 1
56 110.84 atmosphere 1000.0 10 > th dose independent rect. 4 1
58 110.85 precipitation 0.1 10 < th dose independent rect. 4 1
60 110.85 temperature 30.0 30 < th dose dependent rect. 4 1
61 110.85 humidity 70.0 10 > th dose dependent rect. 4 1
62 110.85 precipitation 0.1 10 < th dose dependent rect. 4 1
63 110.86 humidity 50.0 10 > th dose dependent rect. 4 1
66 110.86 atmosphere 1010.0 30 < th dose dependent rect. 4 1
68 110.88 temperature 10.0 10 > th dose independent rect. 4 1
70 110.88 temperature 30.0 10 < th dose independent rect. 4 1
71 110.88 humidity 50.0 10 > th dose independent rect. 4 1
75 110.88 atmosphere 1010.0 10 < th dose independent rect. 4 1
77 110.88 radiation 1.0 10 < th dose independent rect. 4 1
82 110.88 temperature 10.0 10 > th dose independent rect. 5 23
83 110.88 radiation 1.0 10 < th dose dependent rect. 4 1
97 110.92 atmosphere 995.0 10 > th dose dependent rect. 4 1
101 110.93 temperature 10.0 10 > th dose dependent rect. 4 1
139 111.05 humidity 90.0 10 < th dose independent rect. 4 1
142 111.06 wind 1.0 30 > th dose independent rect. 4 1
161 111.28 precipitation 0.1 30 < th dose independent rect. 5 23
162 111.28 precipitation 0.1 30 < th dose dependent rect. 5 23
163 111.29 wind 1.0 30 > th dose dependent rect. 4 1
167 111.37 atmosphere 995.0 10 > th dose independent rect. 5 23
172 111.44 wind 7.0 90 > th dose independent rect. 1 8
173 111.45 wind 7.0 90 > th dose dependent rect. 1 8
179 111.48 humidity 90.0 90 < th dose dependent rect. 4 1
182 111.51 wind 7.0 90 > th dose independent rect. 7 2
189 111.52 wind 7.0 90 > th dose dependent rect. 8 1
193 111.56 temperature 25.0 270 > th dose dependent rect. 1 1
200 111.79 humidity 90.0 10 < th dose dependent rect. 4 1
202 111.84 radiation 40.0 90 > th dose dependent rect. 8 1
225 112.04 wind 9.0 30 < th dose independent rect. 5 23
241 112.50 wind 1.0 30 > th dose independent rect. 5 23
249 112.57 humidity 50.0 30 > th dose independent rect. 5 23
294 113.40 humidity 90.0 10 < th dose independent rect. 2 3
323 113.60 radiation 20.0 270 > th dose independent rect. 6 1
346 113.72 temperature 30.0 10 < th dose dependent rect. 20 1
349 113.74 wind 5.0 10 < th dose dependent rect. 20 1
352 113.77 humidity 70.0 10 > th dose dependent rect. 20 1
377 113.87 wind 5.0 10 < th dose independent rect. 20 1
386 113.88 wind 1.0 10 > th dose independent rect. 20 1
387 113.88 wind 9.0 10 < th dose independent rect. 20 1
388 113.88 temperature 10.0 10 > th dose independent rect. 20 1
390 113.88 temperature 30.0 10 < th dose independent rect. 20 1
391 113.88 humidity 50.0 10 > th dose independent rect. 20 1
394 113.88 atmosphere 995.0 10 > th dose independent rect. 20 1
395 113.88 atmosphere 1010.0 10 < th dose independent rect. 20 1
397 113.88 radiation 1.0 10 < th dose independent rect. 20 1
402 113.88 precipitation 0.1 10 < th dose independent rect. 20 1
405 113.88 temperature 10.0 10 > th dose independent rect. 21 23
406 113.88 radiation 1.0 10 < th dose dependent rect. 20 1
411 113.88 precipitation 0.1 10 < th dose dependent rect. 20 1
437 113.91 atmosphere 1015.0 10 < th dose dependent rect. 20 1
438 113.92 humidity 50.0 30 < th dose dependent rect. 17 19
440 113.93 atmosphere 995.0 10 > th dose dependent rect. 20 1
441 113.94 radiation 20.0 90 > th dose independent rect. 13 21
450 113.98 humidity 50.0 30 < th dose independent rect. 17 19
451 113.98 humidity 50.0 30 < th dose dependent rect. 17 1
473 114.01 humidity 50.0 30 < th dose independent rect. 17 1
474 114.01 radiation 10.0 30 > th dose independent rect. 17 1
517 114.07 temperature 10.0 10 > th dose dependent rect. 20 1
526 114.10 atmosphere 995.0 10 > th dose independent rect. 21 23
537 114.14 temperature 30.0 30 < th dose independent rect. 5 23
583 114.20 humidity 50.0 30 < th dose independent rect. 17 22
596 114.25 temperature 30.0 720 < th dose independent rect. 17 12
601 114.26 humidity 50.0 270 < th dose dependent rect. 13 1
605 114.27 humidity 50.0 270 < th dose independent rect. 13 1
607 114.28 atmosphere 995.0 720 > th dose independent rect. 17 12
608 114.29 radiation 40.0 90 > th dose independent rect. 14 19
609 114.29 wind 1.0 30 > th dose dependent rect. 20 1
613 114.30 radiation 20.0 270 > th dose dependent rect. 6 1
630 114.33 temperature 30.0 10 > th dose dependent sin 12 NA
631 114.33 radiation 1.0 90 < th dose dependent rect. 3 18
633 114.34 humidity 50.0 30 > th dose independent rect. 21 23
640 114.35 radiation 40.0 270 < th dose independent rect. 10 11
642 114.36 humidity 90.0 30 < th dose dependent rect. 20 1
643 114.36 radiation 10.0 30 > th dose dependent rect. 17 1
657 114.37 humidity 90.0 30 < th dose independent rect. 20 1
666 114.38 atmosphere 995.0 720 > th dose independent rect. 9 20
671 114.39 wind 9.0 720 < th dose independent rect. 17 12
673 114.39 radiation 10.0 1440 < th dose dependent rect. 21 1
685 114.41 temperature 10.0 1440 > th dose independent rect. 21 1
688 114.41 temperature 30.0 1440 < th dose independent rect. 21 1
692 114.41 humidity 50.0 1440 > th dose independent rect. 21 1
698 114.41 atmosphere 995.0 1440 > th dose independent rect. 21 1
699 114.41 radiation 1.0 1440 < th dose independent rect. 21 1
719 114.41 temperature 10.0 1440 > th dose independent rect. 22 23
762 114.43 radiation 30.0 90 < th dose dependent rect. 5 23
765 114.44 precipitation 0.1 10 < th dose independent rect. 21 23
772 114.44 precipitation 0.1 10 < th dose dependent rect. 21 23
774 114.45 humidity 50.0 90 > th dose independent rect. 5 14
782 114.46 atmosphere 995.0 720 > th dose independent rect. 9 12
783 114.46 radiation 1.0 720 > th dose independent rect. 18 12
790 114.47 wind 1.0 10 > th dose independent rect. 21 23
803 114.48 temperature 30.0 10 > th dose dependent rect. 14 4
816 114.51 radiation 20.0 720 < th dose dependent rect. 17 12
823 114.53 atmosphere 995.0 720 > th dose independent rect. 1 20
826 114.53 temperature 30.0 10 > th dose dependent rect. 14 21
828 114.54 temperature 30.0 1440 < th dose independent rect. 3 6
830 114.54 atmosphere 1000.0 90 < th dose dependent rect. 13 3
836 114.55 radiation 10.0 720 < th dose independent rect. 17 12
848 114.57 radiation 1.0 90 < th dose independent rect. 3 18
883 114.59 radiation 1.0 4320 < th dose dependent rect. 22 5
884 114.60 temperature 10.0 1440 > th dose independent rect. 6 9
888 114.60 temperature 10.0 1440 > th dose independent rect. 15 15
891 114.60 temperature 30.0 720 < th dose independent rect. 17 18
892 114.60 humidity 70.0 30 < th dose independent rect. 13 21
901 114.61 wind 1.0 10 > th dose independent rect. 21 7
902 114.61 atmosphere 995.0 90 > th dose independent rect. 11 10
913 114.62 atmosphere 1000.0 720 > th dose independent rect. 17 4
915 114.63 temperature 30.0 720 < th dose independent rect. 17 4
917 114.63 humidity 80.0 30 < th dose dependent rect. 13 21
918 114.64 atmosphere 1000.0 270 < th dose independent rect. 12 1
919 114.64 radiation 40.0 90 > th dose independent rect. 8 1
969 114.65 temperature 10.0 720 > th dose independent rect. 5 12
970 114.65 temperature 10.0 720 > th dose independent rect. 17 12
971 114.65 atmosphere 1015.0 720 < th dose independent rect. 5 12
974 114.65 precipitation 0.1 720 < th dose independent rect. 5 12
975 114.65 atmosphere 995.0 720 > th dose independent rect. 7 14
977 114.65 radiation 10.0 90 > th dose dependent sin 13 NA
978 114.65 atmosphere 1000.0 270 < th dose dependent rect. 12 1
983 114.65 precipitation 0.1 720 < th dose dependent rect. 5 12
985 114.66 atmosphere 995.0 720 > th dose independent rect. 9 10
992 114.67 atmosphere 1000.0 10 < th dose independent rect. 24 4