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Os11g0567800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to HcrVf2 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.46 (0.059) R2 : 0.686
β1 : -1.53 (0.238) R2dD : 0.0545 R2D : -0.0974
β2 : 2.36 (0.118) R2dC : 0.275 R2C : 0.316
β3 : 1.15 (0.258) R2dE : 0.0419 R2E : 0.145
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.03 (0.701) R2dD*E : 0.217 R2D*E : 0.285
γ1 : 0.638 (0.119) R2dN8 : 0.0355 R2N8 : 0.0764
σ : 0.893
deviance : 367.31
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C
peak time of C : 2.6
E
wheather : temperature
threshold : 20.14
memory length : 4340
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.2
open length of G : 2.43

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
370.34 0.904 8.44 -1.57 2.35 1.28 0.0278 -7.03 0.645 2.61 20 4348 19.2 2.4
396.92 0.928 8.41 -1.89 2.32 4.15 -0.0519 -- 0.627 2.4 19.26 4309 19.5 1.2
367.31 0.893 8.46 -1.53 2.36 1.15 -- -7.03 0.638 2.6 20.14 4340 19.2 2.43
390.92 0.921 8.4 -1.81 2.36 4.02 -- -- 0.559 2.39 19.2 4309 19.6 1.17
583.4 1.12 8.59 -2.35 -- 3.11 -- -6.2 0.233 -- 20.1 4965 19.7 3.6
582.3 1.13 7.96 0.904 2.5 -- -0.641 -- 1.61 2.67 -- -- -- --
583.73 1.13 7.96 0.92 2.5 -- -- -- 1.61 2.65 -- -- -- --
434.36 0.971 8.23 -1.1 -- 4.33 -- -- 0.84 -- 18.62 3588 20.5 1.21
397.78 0.929 8.06 -- 2.48 3.71 -- -- 1.21 2.55 19.1 4408 20 0.634
947.55 1.44 7.94 1.03 -- -- -- -- 1.67 -- -- -- -- --
606.02 1.15 7.98 -- 2.51 -- -- -- 1.51 2.66 -- -- -- --
460.91 1 8.04 -- -- 4.19 -- -- 1.13 -- 18.69 3579 20 1.05
975.31 1.46 7.97 -- -- -- -- -- 1.56 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 365.57 humidity 60 43200 < th dose independent rect. 20 13
3 366.79 humidity 60 43200 < th dose dependent rect. 19 15
4 367.22 humidity 60 43200 > th dose independent rect. 19 14
12 371.20 humidity 60 43200 < th dose independent rect. 7 2
13 372.14 humidity 60 43200 > th dose independent rect. 8 1
14 372.19 humidity 90 14400 > th dose dependent rect. 1 14
15 372.33 humidity 90 14400 > th dose dependent rect. 5 1
17 372.50 temperature 20 4320 > th dose independent rect. 19 3
22 373.15 humidity 50 43200 > th dose dependent rect. 19 2
28 373.89 humidity 60 43200 < th dose dependent rect. 7 3
33 374.08 humidity 50 43200 > th dose dependent rect. 18 4
48 374.93 humidity 60 43200 < th dose dependent rect. 2 8
52 375.04 humidity 90 43200 < th dose dependent rect. 18 3
53 375.07 humidity 90 43200 < th dose dependent rect. 19 1
59 375.38 humidity 60 43200 < th dose independent rect. 2 7
60 375.42 humidity 50 43200 > th dose independent rect. 19 16
72 375.87 humidity 70 43200 < th dose independent rect. 15 9
74 376.00 humidity 90 43200 < th dose dependent rect. 17 5
84 376.30 humidity 70 43200 < th dose independent rect. 11 22
86 376.40 humidity 70 43200 < th dose independent sin 17 NA
97 376.75 humidity 70 43200 < th dose independent rect. 6 20
98 376.75 humidity 70 43200 < th dose independent rect. 4 21
116 376.96 humidity 50 43200 > th dose dependent rect. 7 2
127 377.11 humidity 70 43200 < th dose independent rect. 15 23
128 377.12 humidity 70 43200 < th dose independent rect. 12 13
136 377.18 humidity 70 43200 < th dose independent rect. 22 23
151 377.38 humidity 70 43200 < th dose independent no NA NA
159 377.48 humidity 70 43200 > th dose independent rect. 5 20
193 377.77 humidity 70 43200 > th dose independent rect. 11 22
197 377.82 humidity 50 43200 > th dose dependent rect. 6 4
206 377.88 humidity 50 43200 < th dose independent rect. 19 17
215 377.95 humidity 50 43200 > th dose independent sin 9 NA
234 378.06 humidity 70 43200 > th dose independent rect. 16 7
244 378.13 humidity 70 43200 > th dose independent rect. 15 9
245 378.14 humidity 70 43200 > th dose independent sin 17 NA
246 378.14 temperature 20 4320 < th dose independent rect. 18 6
249 378.14 humidity 70 43200 > th dose independent rect. 23 22
253 378.17 humidity 70 43200 > th dose independent rect. 15 23
284 378.39 humidity 70 43200 > th dose independent rect. 18 2
288 378.41 humidity 70 43200 > th dose independent no NA NA
327 378.69 humidity 70 43200 > th dose independent rect. 11 14
340 378.78 humidity 70 43200 > th dose independent rect. 17 4
345 378.81 humidity 60 43200 > th dose independent rect. 2 7
357 378.88 temperature 20 4320 < th dose independent rect. 19 4
367 379.01 humidity 90 43200 < th dose dependent rect. 6 4
432 379.48 humidity 90 43200 < th dose dependent rect. 6 16
459 379.70 humidity 80 43200 < th dose dependent rect. 13 9
466 379.73 humidity 50 43200 > th dose independent rect. 4 8
475 379.78 humidity 50 43200 > th dose independent rect. 2 10
528 380.07 humidity 50 43200 < th dose independent sin 8 NA
564 380.28 humidity 80 43200 < th dose dependent rect. 6 13
566 380.30 wind 9 43200 > th dose independent rect. 16 1
573 380.33 humidity 80 43200 < th dose dependent sin 19 NA
607 380.51 wind 7 43200 > th dose independent rect. 18 1
627 380.57 wind 9 43200 < th dose independent rect. 16 1
639 380.63 humidity 50 43200 < th dose independent rect. 4 8
673 380.81 humidity 70 43200 < th dose independent sin 4 NA
691 380.94 humidity 70 43200 > th dose independent sin 4 NA
698 380.96 humidity 50 43200 < th dose dependent sin 9 NA
826 381.55 wind 3 43200 < th dose dependent rect. 20 3
862 381.72 humidity 70 43200 > th dose independent rect. 3 11
969 382.40 humidity 70 43200 < th dose independent rect. 2 12