FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0567600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.69 (0.0483) R2 : 0.539
β1 : -2.58 (0.2) R2dD : 0.23 R2D : 0.00341
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.46 (0.123) R2dE : 0.433 R2E : 0.362
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.03 (0.593) R2dD*E : 0.0979 R2D*E : -0.0332
γ1 : -0.25 (0.105) R2dN8 : 0.00834 R2N8 : -0.0353
σ : 0.877
deviance : 354.56
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.7
memory length : 373
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.98
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.87 0.885 4.67 -2.47 0.494 2.59 -0.898 -4.91 -0.231 10.9 20.6 374 5.92 --
394.12 0.925 4.62 -1.84 0.654 2.89 1.49 -- -0.0928 13.4 20.6 450 6.34 --
356.39 0.879 4.67 -2.42 0.409 2.57 -- -4.45 -0.204 10.8 20.7 388 5.79 --
402.07 0.934 4.58 -1.78 0.655 2.75 -- -- -0.0494 11.8 20.6 457 6.6 --
354.56 0.877 4.69 -2.58 -- 2.46 -- -5.03 -0.25 -- 20.7 373 4.98 --
537.26 1.09 4.5 -1.3 1.75 -- -1.54 -- 0.335 4.12 -- -- -- --
544 1.09 4.49 -1.29 1.74 -- -- -- 0.343 4.11 -- -- -- --
407.21 0.94 4.6 -1.8 -- 2.49 -- -- -0.0659 -- 20.7 588 6.66 --
481.92 1.02 4.53 -- 0.674 2.36 -- -- 0.197 9.92 20.6 463 6.99 --
708.57 1.24 4.5 -1.22 -- -- -- -- 0.39 -- -- -- -- --
587.62 1.13 4.46 -- 1.72 -- -- -- 0.487 4.12 -- -- -- --
486.06 1.03 4.58 -- -- 2.42 -- -- 0.174 -- 20.7 459 5.62 --
747.57 1.28 4.47 -- -- -- -- -- 0.525 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 372.16 temperature 20 270 > th dose independent sin 11 NA
3 372.34 temperature 20 270 < th dose independent rect. 17 16
7 373.49 temperature 20 270 < th dose independent sin 10 NA
9 373.99 temperature 20 720 > th dose independent rect. 18 8
12 375.51 temperature 20 270 > th dose independent rect. 18 14
26 378.02 temperature 20 720 < th dose independent rect. 19 7
44 379.79 temperature 20 720 > th dose independent sin 14 NA
56 381.21 temperature 20 270 > th dose independent rect. 16 23
60 381.65 temperature 20 720 < th dose independent sin 14 NA
74 382.89 temperature 25 270 < th dose dependent rect. 12 22
76 382.96 temperature 20 720 > th dose independent rect. 16 13
117 385.91 temperature 15 270 > th dose dependent sin 9 NA
126 386.70 temperature 20 720 > th dose independent rect. 11 18
134 387.17 temperature 30 270 < th dose dependent sin 9 NA
140 387.46 temperature 25 720 < th dose dependent sin 14 NA
144 387.49 temperature 20 4320 > th dose independent rect. 18 4
153 387.83 temperature 25 720 < th dose dependent rect. 17 10
164 388.42 temperature 20 270 < th dose independent rect. 17 22
200 389.42 temperature 20 270 > th dose independent rect. 3 23
216 389.90 temperature 20 270 > th dose independent no NA NA
243 390.84 temperature 25 720 < th dose dependent rect. 16 13
245 390.89 temperature 20 4320 < th dose independent rect. 18 4
249 390.98 temperature 20 270 < th dose independent no NA NA
297 392.66 temperature 20 270 > th dose independent rect. 10 23
349 394.15 temperature 20 270 < th dose independent rect. 3 23
376 394.87 temperature 20 270 < th dose independent rect. 6 23
385 395.29 temperature 20 270 > th dose independent rect. 12 23
400 395.47 temperature 20 1440 > th dose independent rect. 21 14
405 395.52 temperature 20 1440 > th dose independent rect. 21 17
414 395.71 temperature 20 1440 < th dose independent rect. 21 14
428 395.85 temperature 25 270 < th dose dependent rect. 19 23
432 395.90 temperature 20 1440 < th dose independent rect. 21 17
436 395.94 temperature 25 270 < th dose dependent rect. 16 23
481 396.52 humidity 90 14400 > th dose dependent rect. 5 2
488 396.61 temperature 25 270 < th dose dependent no NA NA
502 396.79 temperature 20 1440 < th dose independent sin 7 NA
509 396.95 temperature 20 1440 < th dose independent rect. 5 2
522 397.10 temperature 20 1440 > th dose independent sin 8 NA
538 397.41 temperature 20 270 > th dose independent rect. 5 23
671 398.97 humidity 90 14400 > th dose dependent rect. 4 4
715 399.49 temperature 20 1440 > th dose independent rect. 6 1
788 400.26 humidity 90 14400 > th dose dependent rect. 22 17
833 400.69 humidity 90 14400 > th dose independent rect. 21 4
881 401.07 temperature 25 1440 < th dose dependent rect. 17 18
902 401.23 temperature 25 270 < th dose dependent rect. 1 23
924 401.40 humidity 90 14400 > th dose dependent sin 5 NA
926 401.42 humidity 90 14400 > th dose independent rect. 16 14
947 401.55 humidity 90 14400 > th dose independent sin 11 NA
948 401.55 humidity 90 14400 > th dose independent rect. 21 6
953 401.57 humidity 90 14400 > th dose dependent rect. 3 7
955 401.59 humidity 90 14400 > th dose independent rect. 17 11
962 401.61 humidity 90 14400 > th dose independent rect. 21 14