Os11g0566800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Bibenzyl synthase (EC 2.3.1.-).
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Os11g0566800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Bibenzyl synthase (EC 2.3.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.87 | 0.838 | 3.09 | -0.829 | 0.686 | 1.22 | -1.32 | -2.63 | 0.364 | 6.87 | 19.85 | 2966 | -- | -- |
| 323.57 | 0.838 | 3.2 | -1.19 | 0.695 | 1.93 | -1.12 | -- | 0.227 | 7.23 | 18.7 | 3022 | -- | -- |
| 322.28 | 0.836 | 3.09 | -0.856 | 0.676 | 1.21 | -- | -2.57 | 0.365 | 7.04 | 19.8 | 2966 | -- | -- |
| 326.71 | 0.842 | 3.19 | -1.22 | 0.694 | 2.02 | -- | -- | 0.234 | 7.08 | 18.6 | 3029 | -- | -- |
| 345.45 | 0.866 | 3.1 | -0.798 | -- | 1.27 | -- | -2.55 | 0.372 | -- | 19.7 | 3494 | -- | -- |
| 381.06 | 0.915 | 3.28 | -2.16 | 0.649 | -- | -0.976 | -- | -0.141 | 7.03 | -- | -- | -- | -- |
| 383.51 | 0.917 | 3.28 | -2.17 | 0.646 | -- | -- | -- | -0.139 | 7.15 | -- | -- | -- | -- |
| 348.81 | 0.87 | 3.2 | -1.12 | -- | 2.06 | -- | -- | 0.281 | -- | 18.76 | 3480 | -- | -- |
| 348.94 | 0.87 | 3.14 | -- | 0.591 | 2.8 | -- | -- | 0.474 | 7.26 | 18.7 | 3806 | -- | -- |
| 405.55 | 0.941 | 3.29 | -2.16 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 507.95 | 1.05 | 3.22 | -- | 0.624 | -- | -- | -- | 0.103 | 7.38 | -- | -- | -- | -- |
| 370.09 | 0.896 | 3.15 | -- | -- | 2.85 | -- | -- | 0.507 | -- | 18.66 | 3688 | -- | -- |
| 528.71 | 1.07 | 3.24 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 320.05 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 2 | 320.54 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 320.61 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 5 | 320.92 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 6 | 321.02 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 7 | 321.12 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 23 | 321.12 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 39 | 321.13 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 52 | 321.86 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 53 | 321.87 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 62 | 322.18 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 67 | 322.31 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 70 | 322.37 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 79 | 322.68 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 110 | 323.63 | wind | 9.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 115 | 323.63 | wind | 9.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 146 | 324.05 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 155 | 324.21 | temperature | 20.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 164 | 324.36 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 219 | 325.14 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 228 | 325.23 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 236 | 325.38 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 253 | 325.74 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 257 | 325.78 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 277 | 326.14 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 328 | 326.63 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 338 | 326.71 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 368 | 326.99 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 379 | 327.07 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 393 | 327.27 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 412 | 327.46 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 422 | 327.58 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 452 | 327.75 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 482 | 328.00 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 496 | 328.12 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 526 | 328.27 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 530 | 328.28 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 547 | 328.53 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 553 | 328.65 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 573 | 328.85 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 587 | 328.92 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 591 | 328.95 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 647 | 329.18 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 663 | 329.25 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 677 | 329.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 679 | 329.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 680 | 329.29 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 694 | 329.35 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 728 | 329.48 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 735 | 329.50 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 737 | 329.51 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 753 | 329.55 | wind | 9.0 | 90 | > th | dose dependent | rect. | 17 | 17 |
| 761 | 329.57 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 780 | 329.69 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 785 | 329.73 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 795 | 329.75 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 796 | 329.76 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 800 | 329.79 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 849 | 329.96 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 852 | 329.96 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 858 | 329.99 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 905 | 330.19 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 913 | 330.21 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 938 | 330.34 | wind | 9.0 | 90 | > th | dose dependent | rect. | 17 | 9 |
| 954 | 330.38 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 958 | 330.41 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 976 | 330.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 981 | 330.50 | wind | 9.0 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 994 | 330.54 | temperature | 15.0 | 4320 | < th | dose independent | sin | 5 | NA |