Os11g0565400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING finger family protein.
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Os11g0565400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING finger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.49 | 0.179 | 10.4 | -0.542 | 0.189 | -0.821 | 0.0334 | 0.362 | -0.0207 | 6.66 | 15.55 | 200 | -- | -- |
| 14.58 | 0.178 | 10.4 | -0.599 | 0.187 | -0.814 | -0.0227 | -- | -0.036 | 6.72 | 15.56 | 200 | -- | -- |
| 14.49 | 0.177 | 10.4 | -0.54 | 0.187 | -0.814 | -- | 0.36 | -0.0182 | 6.75 | 15.93 | 200 | -- | -- |
| 14.58 | 0.178 | 10.4 | -0.595 | 0.189 | -0.837 | -- | -- | -0.0352 | 6.79 | 15 | 193 | -- | -- |
| 15.68 | 0.184 | 10.4 | -0.482 | -- | -0.91 | -- | 0.443 | 0.00695 | -- | 16.77 | 294 | -- | -- |
| 21.92 | 0.22 | 10.4 | -0.777 | 0.407 | -- | 0.248 | -- | -0.155 | 5.18 | -- | -- | -- | -- |
| 22.08 | 0.22 | 10.4 | -0.777 | 0.409 | -- | -- | -- | -0.156 | 5.23 | -- | -- | -- | -- |
| 15.81 | 0.185 | 10.4 | -0.561 | -- | -0.944 | -- | -- | -0.0106 | -- | 15.7 | 278 | -- | -- |
| 22.97 | 0.223 | 10.3 | -- | 0.125 | -1.13 | -- | -- | 0.0641 | 8.13 | 7.505 | 204 | -- | -- |
| 30.81 | 0.259 | 10.4 | -0.762 | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
| 37.97 | 0.288 | 10.4 | -- | 0.396 | -- | -- | -- | -0.0692 | 5.3 | -- | -- | -- | -- |
| 23.48 | 0.226 | 10.3 | -- | -- | -1.19 | -- | -- | 0.0733 | -- | -0.528 | 297 | -- | -- |
| 46.14 | 0.317 | 10.4 | -- | -- | -- | -- | -- | -0.0609 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 2 | 14.54 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 4 | 14.57 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 11 | 14.63 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 12 | 14.65 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 16 | 14.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 18 | 14.67 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 23 | 14.69 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 32 | 14.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 36 | 14.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 37 | 14.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 56 | 14.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 61 | 14.81 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 62 | 14.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 69 | 14.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 78 | 14.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 82 | 14.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 111 | 14.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 115 | 15.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 118 | 15.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 123 | 15.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 124 | 15.03 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 143 | 15.06 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 153 | 15.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 154 | 15.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 155 | 15.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 160 | 15.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 164 | 15.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 180 | 15.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 181 | 15.12 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 192 | 15.13 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 193 | 15.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 211 | 15.15 | wind | 9 | 14400 | > th | dose dependent | sin | 10 | NA |
| 218 | 15.16 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 241 | 15.18 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 271 | 15.22 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 275 | 15.22 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 276 | 15.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 20 |
| 322 | 15.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 331 | 15.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 455 | 15.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 508 | 15.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 10 |
| 516 | 15.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 592 | 15.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 594 | 15.48 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 19 |
| 596 | 15.48 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 609 | 15.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 636 | 15.51 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 674 | 15.54 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 676 | 15.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 10 |
| 679 | 15.54 | radiation | 10 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 730 | 15.57 | temperature | 15 | 720 | > th | dose dependent | sin | 0 | NA |
| 745 | 15.58 | wind | 9 | 14400 | > th | dose independent | sin | 10 | NA |
| 771 | 15.59 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 783 | 15.60 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 833 | 15.63 | wind | 9 | 14400 | < th | dose independent | sin | 10 | NA |
| 859 | 15.64 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 894 | 15.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 895 | 15.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 960 | 15.69 | temperature | 30 | 90 | < th | dose dependent | sin | 20 | NA |
| 978 | 15.70 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 3 |