Os11g0565000 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0565000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.3	(0.0238)	R²	:	0.016
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.137	(0.0502)	R²_dN8	:	0.0207	R²_N8	:	0.016
σ	:	0.449
deviance	:	92.45
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
86.69	0.434	3.3	0.186	0.149	0.383	-0.276	2.1	0.156	3.86	1015	10	--	--
88.06	0.437	3.29	0.197	0.127	0.709	-0.101	--	0.183	3.8	1016	11	--	--
86.9	0.438	3.3	0.192	0.147	0.418	--	2.09	0.158	3.67	1015	12	--	--
88.01	0.437	3.29	0.202	0.143	0.883	--	--	0.163	3.81	1016	11	--	--
88.09	0.44	3.3	0.198	--	0.456	--	2.07	0.162	--	1015	17	--	--
89.75	0.444	3.3	0.213	0.156	--	-0.15	--	0.156	3.66	--	--	--	--
89.81	0.444	3.3	0.215	0.154	--	--	--	0.157	3.37	--	--	--	--
89.13	0.44	3.29	0.207	--	0.93	--	--	0.167	--	1016	11	--	--
89.08	0.44	3.3	--	0.146	0.919	--	--	0.141	3.82	1016	11	--	--
91.15	0.446	3.3	0.222	--	--	--	--	0.161	--	--	--	--	--
91.03	0.446	3.3	--	0.158	--	--	--	0.133	3.37	--	--	--	--
90.26	0.442	3.3	--	--	0.954	--	--	0.145	--	1016	11	--	--
92.45	0.449	3.3	--	--	--	--	--	0.137	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	83.06	atmosphere	1015	30	< th	dose independent	rect.	3	23
3	83.28	temperature	30	14400	> th	dose independent	rect.	16	2
4	83.29	temperature	30	14400	> th	dose dependent	rect.	15	1
5	83.31	temperature	30	14400	< th	dose independent	rect.	16	2
11	83.33	temperature	30	14400	< th	dose independent	rect.	16	6
22	83.33	temperature	30	14400	> th	dose dependent	rect.	14	4
27	83.34	temperature	30	14400	< th	dose independent	rect.	16	12
70	83.40	temperature	30	14400	> th	dose independent	rect.	11	1
71	83.41	temperature	30	14400	< th	dose independent	rect.	11	1
72	83.41	temperature	30	14400	> th	dose dependent	sin	13	NA
99	83.47	temperature	30	14400	> th	dose dependent	rect.	17	1
137	83.53	temperature	30	14400	> th	dose independent	rect.	15	22
138	83.54	temperature	30	14400	> th	dose independent	sin	12	NA
180	83.56	temperature	30	14400	< th	dose independent	rect.	15	22
209	83.59	temperature	30	14400	< th	dose independent	sin	12	NA
266	83.65	temperature	30	14400	> th	dose independent	rect.	10	8
364	83.68	temperature	30	14400	> th	dose dependent	no	NA	NA
488	83.69	temperature	30	14400	> th	dose independent	no	NA	NA
592	83.71	temperature	30	14400	< th	dose independent	rect.	10	9
599	83.71	temperature	30	14400	< th	dose independent	rect.	10	18
623	83.71	temperature	30	14400	> th	dose dependent	rect.	17	23
651	83.74	temperature	30	14400	< th	dose independent	no	NA	NA
899	83.83	temperature	30	14400	< th	dose independent	rect.	4	9