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Os11g0561100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.11 (0.0519) R2 : 0.786
β1 : 4.8 (0.186) R2dD : 0.327 R2D : 0.207
β2 : 3.43 (0.12) R2dC : 0.378 R2C : 0.339
β3 : 1.36 (0.142) R2dE : 0.0544 R2E : -0.0602
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.13 (0.119) R2dN8 : 0.24 R2N8 : 0.00943
σ : 0.946
deviance : 412.57
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C
peak time of C : 23.2
E
wheather : radiation
threshold : 19.33
memory length : 1362
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.3
open length of G : 0.45

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
395.04 0.934 7.11 4.85 3.43 1.35 1.51 -1.69 2.14 23.2 19.03 1401 11.3 0.433
403.32 0.935 7.11 4.86 3.43 1.35 1.47 -- 2.14 23.2 19.38 1396 11.3 0.467
404.68 0.937 7.11 4.79 3.43 1.35 -- -1.67 2.14 23.2 19.09 1393 11.3 0.45
412.57 0.946 7.11 4.8 3.43 1.36 -- -- 2.13 23.2 19.33 1362 11.3 0.45
890.79 1.39 7.1 4.53 -- 2.2 -- -1.84 1.51 -- 28.9 1065 12.3 0.433
488.63 1.04 7.22 4.73 3.44 -- 1.44 -- 1.63 23.2 -- -- -- --
497.4 1.04 7.22 4.67 3.43 -- -- -- 1.62 23.2 -- -- -- --
661.32 1.2 7.12 4.66 -- 2.44 -- -- 1.63 -- 55.71 1031 12.8 1.13
996.76 1.47 7.11 -- 3.44 1.36 -- -- 2.12 23.2 19.77 1353 11.6 0.167
1233.3 1.64 7.14 4.75 -- -- -- -- 1.65 -- -- -- -- --
1071.7 1.53 7.34 -- 3.48 -- -- -- 1.1 23.3 -- -- -- --
1084.27 1.53 7.2 -- -- 2.59 -- -- 0.871 -- 59.69 879 13.5 3.32
1828.96 2 7.26 -- -- -- -- -- 1.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.30 radiation 20.0 1440 < th dose independent rect. 11 1
2 409.46 radiation 20.0 1440 < th dose dependent rect. 11 1
4 414.18 atmosphere 1005.0 720 < th dose independent rect. 19 6
6 415.57 humidity 70.0 43200 > th dose dependent rect. 19 3
7 415.59 precipitation 0.1 270 > th dose independent rect. 2 2
8 415.95 wind 1.0 1440 > th dose independent rect. 23 1
10 416.06 humidity 70.0 43200 > th dose dependent rect. 18 5
11 416.13 precipitation 0.1 270 > th dose dependent rect. 2 2
13 416.70 humidity 70.0 43200 > th dose dependent rect. 20 1
17 417.74 temperature 20.0 720 > th dose independent rect. 16 14
30 419.86 atmosphere 1005.0 720 < th dose independent rect. 21 2
39 420.87 temperature 20.0 720 > th dose independent sin 14 NA
41 420.92 temperature 20.0 1440 < th dose independent rect. 21 5
47 421.25 temperature 20.0 1440 < th dose independent rect. 23 1
48 421.36 temperature 20.0 4320 > th dose independent rect. 18 4
55 421.56 temperature 20.0 1440 > th dose independent rect. 21 5
71 422.26 temperature 20.0 1440 > th dose independent rect. 23 1
85 422.71 temperature 20.0 1440 > th dose independent rect. 19 9
103 423.09 temperature 20.0 1440 < th dose independent rect. 19 11
105 423.13 temperature 20.0 4320 < th dose independent rect. 18 1
142 423.81 temperature 20.0 4320 < th dose independent rect. 18 4
157 424.05 temperature 20.0 1440 < th dose independent sin 12 NA
195 424.58 atmosphere 1010.0 720 < th dose dependent rect. 16 13
230 425.01 temperature 20.0 1440 < th dose independent rect. 12 18
238 425.07 humidity 60.0 43200 > th dose dependent rect. 13 12
243 425.12 humidity 60.0 43200 > th dose dependent sin 17 NA
297 425.66 wind 1.0 270 < th dose independent rect. 3 1
309 425.78 atmosphere 1005.0 1440 > th dose independent rect. 18 5
329 425.90 humidity 60.0 43200 > th dose dependent rect. 10 16
335 425.98 atmosphere 1005.0 1440 > th dose independent rect. 19 3
355 426.13 atmosphere 1010.0 30 < th dose dependent sin 7 NA
369 426.26 temperature 20.0 1440 > th dose independent rect. 1 1
424 426.62 temperature 20.0 1440 > th dose independent rect. 21 17
425 426.62 temperature 20.0 1440 < th dose independent rect. 21 17
429 426.65 atmosphere 1005.0 1440 > th dose independent rect. 16 8
493 427.12 humidity 70.0 14400 < th dose dependent rect. 21 1
513 427.16 atmosphere 1005.0 270 < th dose dependent rect. 23 8
538 427.30 atmosphere 1010.0 720 < th dose dependent sin 13 NA
573 427.49 radiation 10.0 1440 < th dose independent rect. 10 7
619 427.84 radiation 10.0 1440 < th dose independent rect. 10 10
627 427.86 radiation 10.0 1440 < th dose independent rect. 10 12
631 427.88 wind 1.0 1440 < th dose independent rect. 23 1
632 427.88 radiation 1.0 1440 > th dose independent rect. 10 5
652 427.99 radiation 10.0 1440 < th dose independent rect. 10 18
730 428.47 humidity 60.0 43200 > th dose dependent rect. 3 22
852 429.14 wind 1.0 43200 > th dose independent rect. 14 12
868 429.22 temperature 20.0 1440 > th dose independent rect. 3 1
926 429.49 humidity 70.0 14400 > th dose independent rect. 21 6
941 429.61 humidity 60.0 43200 > th dose dependent no NA NA
958 429.69 humidity 60.0 43200 > th dose dependent rect. 17 23
967 429.75 temperature 20.0 1440 < th dose independent rect. 3 1
983 429.82 humidity 70.0 14400 > th dose independent rect. 21 9
992 429.87 radiation 10.0 1440 < th dose independent sin 19 NA
996 429.88 humidity 70.0 14400 > th dose independent rect. 21 4