Os11g0560000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR type resistance protein (Fragment).
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Os11g0560000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR type resistance protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 251.58 | 0.745 | 3.12 | -0.0609 | 0.323 | 0.994 | -0.262 | 2.2 | 0.204 | 8.6 | 23.2 | 308 | -- | -- |
| 256.69 | 0.746 | 3.09 | 0.189 | 0.319 | 0.625 | -0.116 | -- | 0.256 | 8.35 | 24.13 | 343 | -- | -- |
| 251.78 | 0.739 | 3.12 | -0.0643 | 0.326 | 1.01 | -- | 2.22 | 0.202 | 8.53 | 23.06 | 303 | -- | -- |
| 256.67 | 0.746 | 3.09 | 0.185 | 0.312 | 0.607 | -- | -- | 0.264 | 8.42 | 24.93 | 310 | -- | -- |
| 257.42 | 0.747 | 3.13 | -0.0535 | -- | 1.1 | -- | 2.27 | 0.217 | -- | 23 | 357 | -- | -- |
| 261.98 | 0.759 | 3.11 | 0.0306 | 0.362 | -- | -0.0196 | -- | 0.148 | 7.73 | -- | -- | -- | -- |
| 261.98 | 0.758 | 3.11 | 0.03 | 0.362 | -- | -- | -- | 0.148 | 7.71 | -- | -- | -- | -- |
| 261.22 | 0.753 | 3.09 | 0.214 | -- | 0.691 | -- | -- | 0.304 | -- | 26.2 | 455 | -- | -- |
| 257.5 | 0.747 | 3.1 | -- | 0.321 | 0.55 | -- | -- | 0.24 | 8.19 | 24.9 | 310 | -- | -- |
| 269.04 | 0.766 | 3.12 | 0.0347 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 262 | 0.757 | 3.11 | -- | 0.362 | -- | -- | -- | 0.145 | 7.71 | -- | -- | -- | -- |
| 262.31 | 0.754 | 3.1 | -- | -- | 0.61 | -- | -- | 0.265 | -- | 26.25 | 440 | -- | -- |
| 269.07 | 0.766 | 3.12 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 242.20 | wind | 1.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 2 | 243.78 | wind | 1.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 3 | 246.22 | temperature | 20.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 6 | 246.72 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 13 | 247.38 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 18 | 247.59 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 19 | 247.64 | temperature | 20.0 | 270 | < th | dose independent | rect. | 4 | 12 |
| 38 | 248.02 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 4 | 4 |
| 54 | 248.94 | temperature | 20.0 | 270 | < th | dose independent | sin | 1 | NA |
| 55 | 249.01 | wind | 1.0 | 90 | < th | dose dependent | rect. | 6 | 3 |
| 67 | 249.12 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 86 | 249.68 | temperature | 20.0 | 270 | > th | dose independent | sin | 2 | NA |
| 91 | 249.76 | wind | 1.0 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 117 | 250.44 | temperature | 25.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 122 | 250.47 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 138 | 250.75 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 168 | 251.29 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 2 |
| 179 | 251.49 | radiation | 10.0 | 10 | > th | dose independent | rect. | 17 | 16 |
| 180 | 251.51 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 185 | 251.56 | humidity | 80.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 186 | 251.56 | temperature | 20.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 188 | 251.56 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 189 | 251.58 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 209 | 251.68 | humidity | 80.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 216 | 251.75 | humidity | 90.0 | 10 | < th | dose independent | rect. | 24 | 9 |
| 256 | 252.07 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 2 |
| 262 | 252.11 | radiation | 10.0 | 10 | > th | dose independent | sin | 10 | NA |
| 285 | 252.25 | temperature | 25.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 296 | 252.31 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 1 |
| 298 | 252.31 | wind | 1.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 308 | 252.34 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 318 | 252.37 | wind | 1.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 331 | 252.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 381 | 252.63 | humidity | 80.0 | 10 | > th | dose independent | rect. | 8 | 3 |
| 387 | 252.67 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 407 | 252.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 12 |
| 416 | 252.80 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 455 | 253.02 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 540 | 253.24 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 545 | 253.26 | humidity | 90.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 549 | 253.27 | wind | 3.0 | 10 | > th | dose independent | rect. | 23 | 11 |
| 579 | 253.35 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 587 | 253.38 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 622 | 253.50 | humidity | 90.0 | 10 | < th | dose independent | rect. | 19 | 14 |
| 625 | 253.55 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 630 | 253.57 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 642 | 253.62 | wind | 5.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 644 | 253.63 | humidity | 80.0 | 10 | > th | dose independent | rect. | 6 | 5 |
| 673 | 253.70 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 2 |
| 683 | 253.73 | humidity | 80.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 689 | 253.74 | wind | 3.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 707 | 253.76 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 14 | 11 |
| 720 | 253.79 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 733 | 253.84 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 23 |
| 746 | 253.88 | wind | 3.0 | 10 | > th | dose independent | rect. | 12 | 22 |
| 751 | 253.89 | wind | 3.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 756 | 253.90 | temperature | 20.0 | 270 | < th | dose independent | rect. | 19 | 15 |
| 758 | 253.90 | temperature | 20.0 | 270 | < th | dose independent | rect. | 19 | 21 |
| 780 | 253.93 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 785 | 253.94 | temperature | 25.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 816 | 254.02 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 889 | 254.07 | humidity | 80.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 900 | 254.08 | humidity | 90.0 | 10 | > th | dose independent | sin | 4 | NA |
| 914 | 254.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 6 |
| 931 | 254.13 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 15 |
| 961 | 254.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |