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Os11g0559200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.46 (0.0433) R2 : 0.62
β1 : -4.12 (0.168) R2dD : 0.589 R2D : 0.479
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.42 (0.14) R2dE : 0.098 R2E : -0.0436
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.479 (0.0939) R2dN8 : 0.0303 R2N8 : 0.081
σ : 0.806
deviance : 299.11
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1007
memory length : 7475
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.93 0.77 6.42 -3.86 0.461 -1.44 -1.94 -0.641 0.518 11.2 1007 7544 -- --
269.86 0.765 6.44 -3.99 0.455 -1.37 -1.96 -- 0.501 11.1 1007 7577 -- --
283.69 0.784 6.43 -3.98 0.489 -1.44 -- -0.511 0.496 9.99 1007 7564 -- --
284.37 0.785 6.45 -4.1 0.494 -1.4 -- -- 0.472 9.93 1007 7571 -- --
298.59 0.805 6.44 -4.01 -- -1.46 -- -0.481 0.504 -- 1007 7466 -- --
334.66 0.858 6.4 -3.44 0.446 -- -2.08 -- 0.685 11.1 -- -- -- --
351.26 0.878 6.4 -3.53 0.5 -- -- -- 0.673 9.65 -- -- -- --
299.11 0.806 6.46 -4.12 -- -1.42 -- -- 0.479 -- 1007 7475 -- --
672.64 1.21 6.32 -- 0.503 -0.571 -- -- 1.01 10.4 1003 16819 -- --
366.09 0.894 6.41 -3.54 -- -- -- -- 0.674 -- -- -- -- --
680.07 1.22 6.31 -- 0.512 -- -- -- 1.07 10.2 -- -- -- --
688.62 1.22 6.33 -- -- -0.625 -- -- 1.02 -- 1003 16912 -- --
695.96 1.23 6.32 -- -- -- -- -- 1.07 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 239.70 humidity 90.0 14400 < th dose independent rect. 2 1
2 241.37 humidity 90.0 14400 < th dose independent rect. 24 3
3 242.21 humidity 90.0 14400 < th dose independent rect. 24 1
10 249.17 humidity 90.0 14400 > th dose independent rect. 1 2
15 251.18 humidity 90.0 43200 > th dose independent rect. 5 1
16 251.99 humidity 90.0 14400 > th dose independent rect. 1 5
24 255.13 radiation 40.0 14400 > th dose dependent rect. 7 2
40 255.39 humidity 90.0 43200 > th dose dependent rect. 5 1
44 256.06 radiation 30.0 14400 < th dose independent rect. 16 7
47 256.22 radiation 30.0 14400 < th dose independent rect. 16 9
48 256.23 radiation 30.0 14400 < th dose independent rect. 16 5
53 256.39 radiation 30.0 14400 < th dose independent rect. 16 12
80 259.80 radiation 10.0 4320 < th dose independent rect. 18 9
93 260.64 radiation 10.0 4320 < th dose independent rect. 18 7
99 261.04 radiation 20.0 14400 > th dose independent rect. 17 14
100 261.10 radiation 10.0 4320 < th dose independent rect. 17 12
105 261.30 humidity 90.0 43200 < th dose independent rect. 5 1
110 261.36 radiation 10.0 4320 < th dose independent rect. 17 4
115 261.64 wind 5.0 43200 < th dose independent rect. 12 2
118 262.29 wind 5.0 43200 < th dose independent rect. 11 4
123 262.96 radiation 20.0 14400 > th dose independent rect. 6 1
137 263.00 radiation 20.0 14400 < th dose dependent rect. 19 10
139 263.02 wind 5.0 43200 > th dose independent rect. 11 4
141 263.20 radiation 1.0 43200 < th dose independent rect. 18 11
142 263.25 radiation 1.0 14400 < th dose dependent rect. 19 10
143 263.27 wind 5.0 43200 > th dose independent rect. 12 2
152 263.65 radiation 40.0 14400 < th dose independent rect. 15 18
154 263.72 radiation 1.0 43200 < th dose independent rect. 18 9
155 263.73 radiation 1.0 43200 < th dose independent rect. 18 5
156 263.73 radiation 1.0 43200 < th dose independent rect. 18 7
180 264.24 radiation 1.0 14400 < th dose dependent rect. 24 5
191 264.48 radiation 1.0 43200 < th dose dependent rect. 4 1
211 265.34 radiation 1.0 14400 > th dose dependent rect. 18 11
212 265.37 radiation 1.0 43200 > th dose independent rect. 18 11
214 265.41 wind 3.0 43200 > th dose dependent rect. 12 2
231 265.80 radiation 1.0 43200 > th dose independent rect. 18 1
243 265.86 radiation 20.0 14400 > th dose dependent rect. 17 14
248 266.07 radiation 1.0 14400 > th dose dependent rect. 18 1
259 266.12 radiation 40.0 14400 < th dose independent rect. 7 2
263 266.17 radiation 40.0 14400 < th dose independent rect. 18 15
267 266.20 temperature 15.0 43200 < th dose dependent rect. 3 2
276 266.34 radiation 40.0 14400 < th dose independent rect. 22 11
281 266.37 radiation 40.0 14400 < th dose independent rect. 24 9
294 266.51 atmosphere 1005.0 43200 > th dose independent rect. 1 2
301 266.65 atmosphere 1005.0 43200 < th dose independent rect. 2 2
307 266.73 wind 3.0 43200 > th dose dependent rect. 11 4
327 266.91 atmosphere 1005.0 43200 < th dose independent rect. 17 6
333 267.01 atmosphere 1005.0 43200 > th dose independent rect. 18 3
335 267.02 atmosphere 1005.0 43200 < th dose independent rect. 18 3
337 267.02 humidity 90.0 43200 > th dose independent rect. 3 9
340 267.04 radiation 10.0 4320 < th dose independent rect. 16 15
344 267.07 atmosphere 1005.0 43200 > th dose independent rect. 1 4
371 267.35 atmosphere 1005.0 43200 > th dose independent rect. 4 1
388 267.58 precipitation 0.1 43200 < th dose independent rect. 23 1
389 267.58 precipitation 0.1 43200 < th dose dependent rect. 23 1
413 267.74 humidity 90.0 43200 > th dose dependent sin 3 NA
417 267.79 atmosphere 1005.0 43200 < th dose independent rect. 16 12
435 267.87 radiation 20.0 14400 > th dose dependent rect. 6 1
473 268.05 precipitation 0.1 43200 > th dose independent rect. 23 1
475 268.05 precipitation 0.1 43200 > th dose dependent rect. 23 1
493 268.20 atmosphere 1005.0 43200 > th dose independent rect. 15 14
505 268.25 radiation 40.0 4320 < th dose dependent rect. 18 5
509 268.26 atmosphere 1005.0 43200 > th dose independent rect. 15 12
513 268.28 radiation 30.0 14400 > th dose independent rect. 16 16
532 268.36 wind 1.0 43200 < th dose dependent rect. 6 2
550 268.44 atmosphere 1005.0 43200 < th dose independent sin 15 NA
561 268.49 humidity 50.0 43200 < th dose dependent rect. 10 2
611 268.69 atmosphere 1005.0 43200 > th dose independent sin 15 NA
660 268.81 radiation 40.0 4320 < th dose dependent rect. 18 7
746 269.04 radiation 40.0 4320 < th dose dependent rect. 18 3
757 269.07 radiation 10.0 14400 < th dose independent rect. 12 1
805 269.17 humidity 50.0 43200 < th dose dependent rect. 17 19
828 269.24 wind 9.0 43200 < th dose dependent rect. 11 3
858 269.32 humidity 90.0 43200 < th dose independent rect. 4 7
915 269.45 radiation 40.0 43200 > th dose independent rect. 9 2
964 269.54 wind 9.0 43200 < th dose dependent rect. 13 1
971 269.56 temperature 15.0 43200 < th dose dependent sin 7 NA
998 269.61 atmosphere 1005.0 43200 > th dose independent rect. 1 22