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Os11g0558900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.86 (0.0501) R2 : 0.827
β1 : 4.45 (0.184) R2dD : 0.241 R2D : 0.191
β2 : 4.03 (0.117) R2dC : 0.453 R2C : 0.426
β3 : 20 (2.04) R2dE : 0.468 R2E : -0.332
β4 : 2.78 (0.45) R2dD*C : 0.0145 R2D*C : -0.0151
β5 : -61.1 (7.12) R2dD*E : 0.361 R2D*E : -0.446
γ1 : 2 (0.105) R2dN8 : 0.185 R2N8 : 0.0504
σ : 0.926
deviance : 388.73
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_____
C
peak time of C : 22.9
E
wheather : precipitation
threshold : 0.1034
memory length : 279
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2
open length of G : 2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
388.73 0.926 6.86 4.45 4.03 20 2.78 -61.1 2 22.9 0.1034 279 2 2
467.25 1.01 6.78 4.74 4 1.59 2.67 -- 1.91 23.1 0.002699 115 1.92 3.47
421.26 0.956 6.86 4.37 4.06 19.7 -- -60.5 2 23 0.1068 278 2 1.98
476.49 1.02 6.78 4.55 4.07 2.81 -- -- 1.92 23.1 0.09304 367 2.71 4.31
1421.72 1.76 6.76 4.38 -- 19.8 -- -61 2.03 -- 0.1338 258 2.03 1.95
469.76 1.02 6.78 4.76 4.01 -- 2.68 -- 1.9 23.1 -- -- -- --
500.13 1.05 6.78 4.65 3.99 -- -- -- 1.89 23.2 -- -- -- --
1474.99 1.79 6.68 4.69 -- 3.36 -- -- 1.98 -- 0.5 146 1.93 4.66
1022.1 1.49 6.88 -- 4.09 3.86 -- -- 1.48 23.2 0.099 381 1.94 4.86
1495.98 1.81 6.69 4.74 -- -- -- -- 1.93 -- -- -- -- --
1069.42 1.53 6.9 -- 4.04 -- -- -- 1.37 23.3 -- -- -- --
2054.61 2.11 6.83 -- -- 3.92 -- -- 1.49 -- 0.3583 146 1.94 5.52
2089.74 2.13 6.81 -- -- -- -- -- 1.4 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 389.39 precipitation 0.1 270 > th dose independent rect. 2 2
2 390.29 precipitation 0.1 270 > th dose dependent rect. 2 2
5 396.62 temperature 20.0 270 > th dose independent rect. 22 8
7 397.79 atmosphere 1005.0 720 < th dose independent rect. 19 6
10 398.46 atmosphere 1005.0 720 < th dose independent rect. 19 4
13 398.97 wind 1.0 270 < th dose independent rect. 12 16
15 399.39 wind 1.0 270 < th dose independent rect. 21 7
16 399.54 precipitation 0.1 270 > th dose independent rect. 24 4
20 399.74 wind 1.0 270 < th dose independent rect. 16 12
27 400.05 wind 1.0 270 < th dose independent rect. 3 1
36 401.00 temperature 20.0 90 > th dose independent rect. 14 16
44 401.86 temperature 20.0 720 > th dose independent rect. 16 10
46 401.98 temperature 20.0 720 > th dose independent rect. 14 12
48 402.06 temperature 20.0 90 > th dose independent rect. 1 5
66 403.85 wind 1.0 1440 > th dose independent rect. 23 1
70 404.31 temperature 20.0 1440 < th dose independent rect. 23 3
72 404.40 temperature 20.0 1440 < th dose independent rect. 24 1
73 404.41 temperature 20.0 1440 > th dose independent rect. 23 3
79 404.53 temperature 20.0 720 > th dose independent rect. 18 8
93 405.12 temperature 20.0 720 > th dose independent sin 16 NA
99 405.27 temperature 20.0 1440 < th dose independent rect. 20 8
100 405.32 temperature 20.0 1440 < th dose independent rect. 21 6
104 405.48 wind 1.0 270 > th dose independent sin 16 NA
105 405.49 temperature 30.0 90 < th dose dependent rect. 13 12
112 405.65 temperature 20.0 1440 > th dose independent rect. 20 8
114 405.74 temperature 20.0 1440 > th dose independent rect. 21 6
135 406.12 atmosphere 1010.0 270 < th dose dependent rect. 22 8
137 406.24 temperature 20.0 270 > th dose independent sin 12 NA
141 406.27 temperature 30.0 90 < th dose dependent rect. 15 10
171 406.97 temperature 30.0 30 < th dose dependent sin 16 NA
176 407.08 humidity 70.0 10 > th dose dependent rect. 1 9
185 407.32 temperature 20.0 1440 > th dose independent sin 12 NA
188 407.40 temperature 20.0 1440 < th dose independent sin 12 NA
192 407.45 atmosphere 1010.0 30 < th dose dependent sin 8 NA
194 407.46 temperature 20.0 1440 < th dose independent rect. 12 16
203 407.53 temperature 30.0 90 < th dose dependent rect. 17 8
209 407.60 temperature 20.0 4320 > th dose independent rect. 20 2
210 407.61 temperature 20.0 1440 > th dose independent rect. 12 16
232 407.86 wind 1.0 43200 > th dose independent rect. 4 3
262 408.09 humidity 70.0 10 > th dose dependent sin 6 NA
284 408.28 temperature 20.0 4320 < th dose independent rect. 20 2
345 408.86 temperature 20.0 1440 > th dose independent rect. 20 18
373 408.99 temperature 20.0 1440 < th dose independent rect. 20 18
407 409.17 wind 1.0 43200 > th dose independent rect. 23 7
415 409.22 temperature 20.0 1440 > th dose independent rect. 23 11
452 409.39 temperature 20.0 1440 < th dose independent rect. 23 11
514 409.68 wind 1.0 43200 < th dose dependent rect. 4 3
517 409.70 atmosphere 1000.0 270 > th dose independent rect. 23 7
568 409.96 atmosphere 1005.0 10 < th dose dependent rect. 24 8
653 410.52 wind 1.0 270 < th dose independent sin 15 NA
763 411.11 temperature 20.0 1440 > th dose independent no NA NA
809 411.38 temperature 20.0 1440 < th dose independent no NA NA
828 411.50 wind 1.0 43200 < th dose independent rect. 4 3
839 411.57 atmosphere 1010.0 720 < th dose dependent rect. 18 9
887 411.96 atmosphere 1010.0 720 < th dose dependent rect. 17 11
889 411.98 temperature 15.0 90 > th dose dependent rect. 14 16
922 412.22 radiation 10.0 270 < th dose dependent rect. 23 10
943 412.39 precipitation 0.1 270 > th dose independent rect. 2 7
945 412.39 humidity 90.0 10 < th dose independent rect. 6 9
947 412.39 wind 1.0 270 < th dose dependent rect. 12 16
981 412.67 humidity 80.0 14400 > th dose dependent rect. 13 1