Os11g0558400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os11g0558400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.72 | 0.575 | 6.33 | 0.184 | 1.39 | 2.5 | -1.62 | -4.76 | -0.0968 | 3.22 | 50.99 | 923 | -- | -- |
| 171.82 | 0.61 | 6.33 | 0.184 | 1.39 | 2.5 | -1.3 | -- | -0.0968 | 3.22 | 50.99 | 923 | -- | -- |
| 158.11 | 0.586 | 6.33 | 0.211 | 1.39 | 2.48 | -- | -4.39 | -0.0884 | 3.26 | 50.85 | 921 | -- | -- |
| 158.27 | 0.586 | 6.39 | 0.0325 | 1.42 | 1.15 | -- | -- | -0.108 | 3.21 | 53.42 | 994 | -- | -- |
| 244.95 | 0.729 | 6.35 | 0.0636 | -- | 2.41 | -- | -3.48 | -0.0145 | -- | 51 | 268 | -- | -- |
| 178.02 | 0.626 | 6.36 | -0.25 | 1.28 | -- | -1.68 | -- | 0.0372 | 3.47 | -- | -- | -- | -- |
| 186.73 | 0.64 | 6.35 | -0.22 | 1.28 | -- | -- | -- | 0.0468 | 3.55 | -- | -- | -- | -- |
| 244.11 | 0.728 | 6.37 | -0.0612 | -- | 1.26 | -- | -- | -0.0266 | -- | 53 | 350 | -- | -- |
| 158.15 | 0.586 | 6.39 | -- | 1.39 | 1.14 | -- | -- | -0.105 | 3.24 | 53.61 | 1006 | -- | -- |
| 277.62 | 0.779 | 6.35 | -0.167 | -- | -- | -- | -- | 0.0807 | -- | -- | -- | -- | -- |
| 188.01 | 0.641 | 6.34 | -- | 1.27 | -- | -- | -- | 0.0713 | 3.55 | -- | -- | -- | -- |
| 203.47 | 0.664 | 6.34 | -- | -- | 0.964 | -- | -- | 0.104 | -- | 75.43 | 233 | -- | -- |
| 278.35 | 0.779 | 6.35 | -- | -- | -- | -- | -- | 0.0991 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.93 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 7 |
| 2 | 147.57 | humidity | 80 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 9 | 147.97 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 11 | 148.10 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 15 | 148.26 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 16 | 148.26 | humidity | 80 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 23 | 148.42 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 27 | 148.46 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 16 |
| 31 | 148.60 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 39 | 148.74 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 13 |
| 40 | 148.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 45 | 148.82 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 15 |
| 46 | 148.83 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 57 | 148.83 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 15 |
| 63 | 148.99 | humidity | 70 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 64 | 149.03 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 11 |
| 76 | 149.35 | humidity | 70 | 720 | < th | dose dependent | sin | 11 | NA |
| 116 | 149.94 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 128 | 149.94 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 130 | 149.97 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 136 | 150.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 139 | 150.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 147 | 150.34 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 149 | 150.35 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 151 | 150.37 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 178 | 150.57 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 289 | 151.15 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 320 | 151.29 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 7 |
| 397 | 151.55 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 411 | 151.59 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 428 | 151.62 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 437 | 151.73 | radiation | 1 | 720 | < th | dose dependent | sin | 18 | NA |
| 466 | 151.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 478 | 151.85 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 668 | 152.42 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 708 | 152.62 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 751 | 152.73 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 754 | 152.75 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 762 | 152.78 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 772 | 152.78 | humidity | 50 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 773 | 152.79 | humidity | 50 | 1440 | > th | dose independent | rect. | 22 | 19 |
| 782 | 152.82 | humidity | 50 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 789 | 152.84 | humidity | 50 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 930 | 153.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 931 | 153.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 933 | 153.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 937 | 153.47 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 949 | 153.51 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 961 | 153.55 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 19 |
| 979 | 153.58 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 981 | 153.59 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 1 |