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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0558300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acyl CoA synthetase (EC 6.2.1.3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0212) R2 : 1.85e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00409 (0.0445) R2dN8 : 2.39e-05 R2N8 : 1.85e-05
σ : 0.398
deviance : 72.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.27 0.388 3.26 0.0328 0.119 -0.271 0.0499 1.7 -0.00982 9.24 1.1 16 -- --
70.76 0.392 3.24 0.1 0.131 -0.147 0.084 -- 0.00902 9.01 1.097 16 -- --
68.28 0.385 3.26 0.0346 0.119 -0.269 -- 1.71 -0.00982 9.13 1.1 16 -- --
70.78 0.392 3.24 0.104 0.132 -0.139 -- -- 0.00862 8.65 1.1 16 -- --
69.1 0.387 3.26 0.0301 -- -0.288 -- 1.75 -0.00979 -- 1.073 16 -- --
71.2 0.396 3.24 0.121 0.153 -- -0.0245 -- 0.00726 7.71 -- -- -- --
71.2 0.395 3.24 0.121 0.153 -- -- -- 0.00736 7.78 -- -- -- --
71.75 0.395 3.24 0.103 -- -0.166 -- -- 0.00922 -- 1.091 16 -- --
71.06 0.393 3.24 -- 0.133 -0.144 -- -- 0.00109 8.68 1 16 -- --
72.46 0.398 3.24 0.123 -- -- -- -- 0.00951 -- -- -- -- --
71.58 0.396 3.24 -- 0.154 -- -- -- -0.00609 7.72 -- -- -- --
71.99 0.395 3.24 -- -- -0.143 -- -- 0.00488 -- 1.344 15 -- --
72.86 0.398 3.25 -- -- -- -- -- -0.00409 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.57 temperature 20.0 30 > th dose dependent rect. 2 1
2 59.61 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 59.62 temperature 20.0 30 > th dose independent rect. 2 1
5 59.68 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 59.85 wind 3.0 30 < th dose independent rect. 2 1
11 59.85 wind 5.0 30 < th dose dependent rect. 2 1
13 59.86 temperature 25.0 30 < th dose independent rect. 2 1
18 59.90 humidity 80.0 30 > th dose independent rect. 2 1
20 59.92 temperature 10.0 30 > th dose independent rect. 2 1
23 59.92 humidity 50.0 30 > th dose independent rect. 2 1
27 59.92 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 59.92 radiation 1.0 30 < th dose independent rect. 2 1
34 59.92 precipitation 0.1 30 < th dose independent rect. 2 1
35 59.92 temperature 10.0 30 > th dose independent rect. 3 23
36 59.92 radiation 1.0 30 < th dose dependent rect. 2 1
41 59.92 precipitation 0.1 30 < th dose dependent rect. 2 1
42 59.93 humidity 50.0 30 > th dose dependent rect. 2 1
48 60.43 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 60.54 temperature 30.0 30 < th dose dependent rect. 2 1
51 60.65 radiation 1.0 43200 < th dose dependent rect. 3 1
52 60.78 wind 1.0 30 > th dose independent rect. 2 1
73 61.42 wind 9.0 1440 < th dose independent rect. 3 1
74 61.42 temperature 10.0 1440 > th dose independent rect. 3 1
77 61.42 temperature 30.0 1440 < th dose independent rect. 3 1
81 61.42 humidity 50.0 1440 > th dose independent rect. 3 1
90 61.42 atmosphere 995.0 1440 > th dose independent rect. 3 1
91 61.42 radiation 1.0 1440 < th dose independent rect. 3 1
111 61.42 temperature 10.0 1440 > th dose independent rect. 4 23
162 62.49 wind 9.0 30 < th dose independent rect. 3 23
163 62.64 atmosphere 1000.0 30 > th dose independent rect. 3 23
172 62.96 precipitation 0.1 30 < th dose independent rect. 3 23
173 62.96 precipitation 0.1 30 < th dose dependent rect. 3 23
201 64.69 humidity 50.0 30 > th dose independent rect. 3 23
245 65.83 humidity 90.0 90 < th dose independent rect. 2 1
266 66.39 atmosphere 995.0 720 > th dose independent rect. 23 16
278 66.60 precipitation 0.1 720 < th dose independent rect. 15 8
280 66.60 precipitation 0.1 720 < th dose dependent rect. 15 8
288 66.73 atmosphere 1000.0 90 < th dose independent rect. 7 3
291 66.74 temperature 10.0 720 > th dose independent rect. 15 8
292 66.74 temperature 10.0 720 > th dose independent rect. 23 16
294 66.76 temperature 30.0 30 < th dose independent rect. 3 23
295 66.77 humidity 50.0 720 > th dose independent rect. 3 8
297 66.78 atmosphere 1000.0 10 < th dose independent rect. 6 5
299 66.79 atmosphere 1000.0 270 < th dose independent rect. 6 1
306 66.80 atmosphere 1000.0 10 > th dose independent rect. 2 12
313 66.86 temperature 10.0 720 > th dose independent rect. 3 8
314 66.86 atmosphere 995.0 720 > th dose independent rect. 3 8
315 66.86 temperature 10.0 720 > th dose independent rect. 11 16
330 66.94 atmosphere 1000.0 90 < th dose independent rect. 8 1
348 66.98 atmosphere 1000.0 10 > th dose independent rect. 2 14
360 67.05 wind 1.0 10 < th dose independent rect. 2 5
362 67.06 wind 9.0 720 < th dose independent rect. 3 8
364 67.07 atmosphere 995.0 720 > th dose independent rect. 15 8
367 67.11 atmosphere 995.0 720 > th dose independent rect. 11 16
369 67.12 precipitation 0.1 720 < th dose independent rect. 11 16
371 67.12 precipitation 0.1 720 < th dose dependent rect. 11 16
373 67.13 atmosphere 1000.0 10 < th dose independent rect. 1 10
386 67.18 wind 3.0 30 < th dose dependent rect. 2 6
421 67.27 atmosphere 1000.0 10 < th dose dependent rect. 8 2
438 67.31 radiation 40.0 30 > th dose dependent rect. 14 20
443 67.32 radiation 40.0 30 > th dose dependent rect. 9 1
457 67.32 radiation 40.0 10 < th dose dependent rect. 14 12
473 67.36 humidity 90.0 90 < th dose independent rect. 1 3
544 67.48 temperature 25.0 30 > th dose dependent rect. 22 1
580 67.53 radiation 40.0 30 < th dose independent rect. 14 12
583 67.53 atmosphere 1000.0 30 < th dose dependent rect. 6 5
584 67.53 wind 3.0 30 < th dose dependent rect. 2 11
585 67.54 humidity 90.0 30 < th dose independent rect. 22 1
609 67.55 humidity 90.0 30 < th dose dependent rect. 22 1
617 67.56 temperature 20.0 30 > th dose independent rect. 22 1
627 67.57 atmosphere 1005.0 30 > th dose dependent rect. 22 1
628 67.57 atmosphere 1000.0 270 < th dose dependent rect. 6 1
650 67.58 wind 1.0 30 > th dose independent rect. 22 1
651 67.58 wind 9.0 1440 < th dose independent rect. 23 1
652 67.58 temperature 10.0 1440 > th dose independent rect. 23 1
655 67.58 temperature 30.0 1440 < th dose independent rect. 23 1
659 67.58 humidity 50.0 1440 > th dose independent rect. 23 1
669 67.58 atmosphere 995.0 1440 > th dose independent rect. 23 1
670 67.58 radiation 1.0 1440 < th dose independent rect. 23 1
692 67.58 temperature 10.0 1440 > th dose independent rect. 24 23
695 67.58 radiation 1.0 1440 < th dose dependent rect. 23 1
708 67.61 wind 5.0 30 < th dose independent rect. 22 1
711 67.61 temperature 10.0 30 > th dose independent rect. 22 1
714 67.61 temperature 30.0 30 < th dose independent rect. 22 1
715 67.61 humidity 50.0 30 > th dose independent rect. 22 1
718 67.61 atmosphere 995.0 30 > th dose independent rect. 22 1
719 67.61 atmosphere 1005.0 30 > th dose independent rect. 22 1
720 67.61 atmosphere 1010.0 30 < th dose independent rect. 22 1
722 67.61 radiation 1.0 30 < th dose independent rect. 22 1
727 67.61 precipitation 0.1 30 < th dose independent rect. 22 1
728 67.61 temperature 10.0 30 > th dose independent rect. 23 23
729 67.61 wind 9.0 30 < th dose dependent rect. 22 1
731 67.61 radiation 1.0 30 < th dose dependent rect. 22 1
736 67.61 precipitation 0.1 30 < th dose dependent rect. 22 1
752 67.65 humidity 50.0 30 > th dose dependent rect. 22 1
789 67.66 atmosphere 1000.0 270 > th dose independent rect. 23 14
793 67.66 wind 1.0 30 > th dose dependent rect. 22 1
800 67.67 radiation 10.0 30 > th dose dependent rect. 16 18
803 67.68 radiation 40.0 10 > th dose dependent sin 11 NA
804 67.68 atmosphere 1015.0 30 < th dose dependent rect. 22 1
810 67.68 humidity 80.0 14400 < th dose dependent rect. 4 5
838 67.69 humidity 60.0 10 > th dose independent rect. 14 12
855 67.72 atmosphere 1010.0 90 < th dose dependent rect. 7 3
861 67.73 radiation 1.0 30 > th dose dependent rect. 7 3
866 67.74 wind 1.0 30 < th dose independent rect. 2 10
898 67.79 radiation 10.0 30 < th dose independent rect. 3 23
909 67.81 humidity 80.0 30 < th dose independent rect. 9 1
912 67.81 precipitation 0.1 720 < th dose independent rect. 3 8
914 67.81 precipitation 0.1 720 < th dose dependent rect. 3 8
919 67.82 temperature 30.0 30 < th dose dependent rect. 22 1
925 67.83 wind 9.0 720 < th dose dependent rect. 2 1
927 67.83 radiation 10.0 30 > th dose dependent rect. 9 1
944 67.84 atmosphere 1000.0 720 > th dose independent rect. 19 8
958 67.86 temperature 10.0 10 > th dose independent rect. 2 12
960 67.86 temperature 10.0 10 > th dose independent rect. 14 12
962 67.86 atmosphere 1015.0 10 < th dose independent rect. 2 12
963 67.86 wind 1.0 90 > th dose independent rect. 3 23
974 67.87 radiation 1.0 30 < th dose dependent rect. 2 14