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Os11g0557900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ARP2/3 complex 16 kDa subunit (p16-Arc) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0133) R2 : 0.134
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.235 (0.028) R2dN8 : 0.173 R2N8 : 0.134
σ : 0.251
deviance : 28.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.39 0.196 10.7 -0.237 0.3 0.32 0.743 -0.585 0.111 17.6 21.4 998 -- --
18.21 0.199 10.6 -0.102 0.297 0.371 0.696 -- 0.133 17.5 21.35 1133 -- --
18.66 0.201 10.7 -0.246 0.313 0.332 -- -0.573 0.113 17.8 21.3 1104 -- --
19.47 0.206 10.6 -0.113 0.308 0.385 -- -- 0.14 17.8 21.21 1140 -- --
23.27 0.225 10.6 -0.203 -- 0.352 -- -0.412 0.117 -- 21.23 774 -- --
22.61 0.223 10.6 0.0537 0.302 -- 0.749 -- 0.244 17.8 -- -- -- --
23.86 0.229 10.6 0.0475 0.31 -- -- -- 0.246 18.3 -- -- -- --
23.56 0.226 10.6 -0.0818 -- 0.375 -- -- 0.132 -- 21.3 606 -- --
19.72 0.207 10.6 -- 0.313 0.349 -- -- 0.16 17.8 21.3 1133 -- --
28.85 0.251 10.6 0.0393 -- -- -- -- 0.24 -- -- -- -- --
23.92 0.229 10.6 -- 0.309 -- -- -- 0.241 18.4 -- -- -- --
23.75 0.227 10.6 -- -- 0.353 -- -- 0.154 -- 21.24 603 -- --
28.89 0.251 10.6 -- -- -- -- -- 0.235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.31 temperature 20 720 > th dose independent rect. 12 20
3 17.44 temperature 20 1440 > th dose independent rect. 22 2
10 17.55 temperature 20 1440 < th dose independent rect. 22 2
14 17.57 humidity 90 43200 > th dose independent rect. 13 1
17 17.60 humidity 90 43200 > th dose dependent rect. 13 1
36 17.76 temperature 20 720 > th dose independent rect. 19 12
37 17.77 temperature 20 1440 > th dose independent rect. 21 10
42 17.78 temperature 20 1440 < th dose independent rect. 21 10
45 17.79 temperature 20 1440 < th dose independent rect. 5 1
46 17.79 humidity 90 14400 > th dose independent rect. 23 1
67 17.86 temperature 20 1440 > th dose independent rect. 5 2
74 17.86 temperature 20 720 < th dose independent rect. 15 16
78 17.87 temperature 20 720 < th dose independent rect. 17 14
87 17.89 radiation 1 14400 > th dose independent rect. 18 1
100 17.90 temperature 20 720 < th dose independent sin 11 NA
107 17.90 radiation 30 4320 < th dose independent rect. 16 16
127 17.93 humidity 90 14400 > th dose dependent rect. 23 1
128 17.94 radiation 20 1440 < th dose independent rect. 11 1
139 17.95 humidity 90 43200 > th dose dependent rect. 12 3
143 17.97 temperature 20 720 > th dose independent sin 12 NA
146 17.97 humidity 90 43200 < th dose independent rect. 12 2
170 17.99 temperature 25 1440 < th dose dependent rect. 21 1
185 18.02 temperature 20 1440 < th dose independent rect. 3 4
209 18.06 temperature 20 1440 < th dose independent rect. 1 6
210 18.06 humidity 90 14400 > th dose independent rect. 21 6
240 18.08 temperature 25 720 < th dose dependent rect. 16 17
254 18.10 temperature 20 1440 > th dose independent rect. 3 4
258 18.10 radiation 20 43200 < th dose independent rect. 19 11
272 18.11 temperature 20 1440 > th dose independent rect. 1 6
336 18.15 humidity 90 14400 > th dose independent rect. 18 10
356 18.16 temperature 20 720 > th dose independent rect. 19 23
364 18.17 atmosphere 995 43200 < th dose independent rect. 22 16
381 18.18 temperature 20 720 < th dose independent rect. 21 20
423 18.21 humidity 90 14400 > th dose independent rect. 21 11
464 18.23 humidity 90 14400 > th dose independent sin 12 NA
486 18.23 humidity 90 14400 > th dose dependent rect. 23 16
508 18.24 temperature 20 720 > th dose independent rect. 3 23
512 18.24 humidity 90 14400 > th dose dependent rect. 4 3
514 18.24 humidity 90 14400 > th dose dependent rect. 22 11
522 18.25 humidity 90 14400 < th dose independent rect. 21 4
543 18.25 humidity 90 14400 > th dose dependent rect. 13 18
565 18.26 atmosphere 995 43200 < th dose dependent sin 8 NA
569 18.26 radiation 10 4320 > th dose dependent rect. 16 16
595 18.27 radiation 1 43200 < th dose dependent rect. 4 1
615 18.28 atmosphere 995 43200 > th dose independent rect. 1 11
648 18.29 temperature 20 720 > th dose independent rect. 1 23
652 18.29 temperature 25 1440 < th dose dependent sin 12 NA
654 18.29 humidity 90 14400 > th dose dependent sin 7 NA
659 18.29 temperature 15 1440 > th dose dependent rect. 23 5
674 18.30 temperature 20 720 > th dose independent no NA NA
675 18.30 radiation 1 43200 > th dose independent rect. 11 3
676 18.30 radiation 1 43200 < th dose independent rect. 11 3
679 18.30 atmosphere 995 43200 < th dose independent rect. 2 9
683 18.30 radiation 1 14400 < th dose independent rect. 18 11
690 18.30 atmosphere 995 43200 > th dose independent rect. 22 16
692 18.30 atmosphere 995 43200 > th dose independent rect. 19 19
698 18.30 temperature 15 1440 > th dose dependent rect. 24 3
700 18.30 radiation 1 43200 < th dose dependent rect. 11 3
739 18.31 temperature 15 1440 > th dose dependent rect. 1 1
751 18.31 radiation 40 43200 < th dose dependent rect. 19 10
764 18.32 radiation 30 43200 < th dose independent rect. 3 4
788 18.32 atmosphere 995 43200 < th dose dependent rect. 21 13
803 18.32 temperature 25 720 < th dose dependent rect. 17 22
805 18.33 radiation 1 43200 > th dose independent rect. 12 1
806 18.33 radiation 10 1440 < th dose independent rect. 16 1
846 18.33 temperature 25 720 < th dose dependent rect. 23 22
850 18.34 radiation 30 43200 < th dose independent rect. 5 2
855 18.34 radiation 30 43200 < th dose independent rect. 23 8
882 18.34 humidity 90 14400 > th dose dependent rect. 3 6
886 18.34 radiation 1 43200 < th dose dependent rect. 21 8
888 18.34 radiation 1 43200 < th dose dependent rect. 19 10
894 18.34 temperature 10 720 > th dose dependent rect. 12 21
955 18.36 temperature 20 1440 < th dose independent rect. 1 1
956 18.36 radiation 1 43200 < th dose independent rect. 12 1
958 18.36 atmosphere 995 43200 < th dose independent rect. 5 3
961 18.36 atmosphere 995 43200 < th dose independent rect. 4 5
982 18.36 radiation 1 43200 < th dose dependent rect. 12 1
985 18.36 temperature 30 1440 < th dose dependent rect. 1 4
991 18.36 atmosphere 995 43200 < th dose dependent rect. 2 7