Os11g0557500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidoglycan-binding LysM domain containing protein.
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Os11g0557500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidoglycan-binding LysM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.49 | 0.601 | 3.55 | 1.22 | 1.42 | -0.949 | 1.08 | 1.87 | 0.845 | 21.4 | 25.06 | 884 | -- | -- |
| 164.77 | 0.598 | 3.59 | 0.935 | 1.43 | -0.819 | 1.45 | -- | 0.8 | 21.4 | 24.93 | 876 | -- | -- |
| 167.13 | 0.602 | 3.52 | 1.43 | 1.44 | -1.05 | -- | 3.3 | 0.912 | 21.3 | 25 | 856 | -- | -- |
| 170.31 | 0.608 | 3.6 | 0.82 | 1.35 | -0.696 | -- | -- | 0.754 | 21.4 | 25.09 | 920 | -- | -- |
| 249.1 | 0.739 | 3.55 | 0.793 | -- | -0.724 | -- | 0.506 | 0.756 | -- | 25 | 856 | -- | -- |
| 178.35 | 0.626 | 3.6 | 0.676 | 1.16 | -- | 1.08 | -- | 0.696 | 21.4 | -- | -- | -- | -- |
| 182.61 | 0.633 | 3.6 | 0.636 | 1.15 | -- | -- | -- | 0.695 | 21.4 | -- | -- | -- | -- |
| 243.22 | 0.73 | 3.54 | 0.793 | -- | -0.838 | -- | -- | 0.813 | -- | 22.59 | 1500 | -- | -- |
| 186.63 | 0.636 | 3.61 | -- | 1.3 | -0.517 | -- | -- | 0.655 | 21.5 | 25.2 | 884 | -- | -- |
| 260.76 | 0.755 | 3.57 | 0.643 | -- | -- | -- | -- | 0.691 | -- | -- | -- | -- | -- |
| 193.29 | 0.65 | 3.62 | -- | 1.15 | -- | -- | -- | 0.624 | 21.5 | -- | -- | -- | -- |
| 259.27 | 0.752 | 3.57 | -- | -- | -0.693 | -- | -- | 0.706 | -- | 22.59 | 1500 | -- | -- |
| 271.68 | 0.769 | 3.59 | -- | -- | -- | -- | -- | 0.62 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.59 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 2 | 157.63 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 3 | 157.70 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 10 |
| 8 | 158.09 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 4 |
| 11 | 158.46 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 13 | 158.70 | temperature | 25.0 | 90 | < th | dose independent | rect. | 17 | 2 |
| 15 | 158.90 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 19 | 159.17 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 20 | 159.25 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 9 |
| 22 | 159.34 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 23 | 159.35 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 7 |
| 28 | 159.51 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 44 | 160.14 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 17 |
| 49 | 160.21 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 15 |
| 59 | 160.54 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 81 | 161.07 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 20 |
| 91 | 161.20 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 9 |
| 108 | 161.34 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 116 | 161.45 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 119 | 161.50 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 152 | 161.94 | temperature | 25.0 | 10 | < th | dose dependent | sin | 20 | NA |
| 183 | 162.32 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 221 | 162.89 | temperature | 25.0 | 90 | > th | dose independent | rect. | 11 | 14 |
| 232 | 162.99 | temperature | 25.0 | 90 | > th | dose independent | sin | 18 | NA |
| 253 | 163.17 | temperature | 25.0 | 90 | < th | dose independent | sin | 19 | NA |
| 272 | 163.26 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 287 | 163.51 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 10 | 15 |
| 289 | 163.53 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 299 | 163.58 | temperature | 25.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 301 | 163.59 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 317 | 163.64 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 326 | 163.65 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 14 |
| 362 | 163.74 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 10 |
| 370 | 163.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 14 |
| 371 | 163.78 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 11 | 13 |
| 400 | 163.87 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 413 | 163.91 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 438 | 163.98 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 9 |
| 540 | 164.17 | radiation | 1.0 | 720 | < th | dose independent | rect. | 22 | 20 |
| 551 | 164.20 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 10 |
| 590 | 164.26 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 598 | 164.27 | radiation | 1.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 619 | 164.31 | radiation | 1.0 | 720 | < th | dose independent | sin | 20 | NA |
| 622 | 164.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 627 | 164.32 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 672 | 164.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 679 | 164.41 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 715 | 164.46 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 738 | 164.51 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 787 | 164.65 | humidity | 80.0 | 720 | > th | dose independent | sin | 18 | NA |
| 793 | 164.66 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 794 | 164.66 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 8 | 17 |
| 802 | 164.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 833 | 164.71 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 886 | 164.77 | wind | 5.0 | 270 | < th | dose independent | rect. | 14 | 9 |
| 900 | 164.80 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 908 | 164.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 922 | 164.83 | temperature | 25.0 | 30 | < th | dose independent | rect. | 14 | 14 |
| 964 | 164.89 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 993 | 164.91 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 20 |