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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0557400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1618 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0356) R2 : 0.343
β1 : 1.27 (0.134) R2dD : 0.143 R2D : 0.0356
β2 : 1.06 (0.103) R2dC : 0.196 R2C : -0.0507
β3 : -2.28 (0.173) R2dE : 0.362 R2E : 0.00916
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.262 (0.08) R2dN8 : 0.0274 R2N8 : -0.0422
σ : 0.658
deviance : 199.34
__
_____
C
peak time of C : 16.7
E
wheather : temperature
threshold : 17.24
memory length : 6
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.66 0.645 3.41 1.03 1.06 -2.54 2.26 -1.8 0.219 16.8 15.3 8 -- --
191.31 0.644 3.38 1.28 1.04 -2.6 1.89 -- 0.281 17 14.06 6 -- --
200.05 0.664 3.38 1.23 1.05 -2.51 -- -0.342 0.276 16.7 15.3 8 -- --
199.34 0.658 3.38 1.27 1.06 -2.28 -- -- 0.262 16.7 17.24 6 -- --
245.46 0.73 3.39 1.07 -- -1.59 -- -0.036 0.136 -- 15.3 4 -- --
257.87 0.753 3.46 0.821 0.616 -- 1.61 -- -0.0765 19.4 -- -- -- --
264.79 0.762 3.46 0.784 0.617 -- -- -- -0.0744 19.6 -- -- -- --
245.46 0.73 3.39 1.07 -- -1.6 -- -- 0.137 -- 15.3 4 -- --
237.88 0.722 3.42 -- 0.909 -1.74 -- -- 0.0805 17.1 18.1 5 -- --
285.22 0.789 3.44 0.775 -- -- -- -- -0.0837 -- -- -- -- --
280.98 0.784 3.48 -- 0.61 -- -- -- -0.162 19.7 -- -- -- --
273.74 0.773 3.43 -- -- -1.14 -- -- -0.0183 -- 18 4 -- --
301.05 0.81 3.46 -- -- -- -- -- -0.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.15 temperature 30 10 < th dose dependent rect. 21 23
3 187.69 temperature 30 10 < th dose dependent rect. 3 23
6 188.53 temperature 30 30 < th dose dependent rect. 19 23
8 188.79 temperature 30 10 < th dose dependent rect. 11 23
9 188.81 temperature 15 10 > th dose dependent no NA NA
11 188.89 temperature 30 10 < th dose dependent no NA NA
12 189.01 temperature 30 10 < th dose dependent rect. 9 23
16 189.33 temperature 30 10 < th dose dependent rect. 15 23
18 189.43 temperature 30 10 < th dose dependent rect. 23 23
22 189.72 temperature 30 90 < th dose dependent rect. 9 22
23 189.73 temperature 30 30 < th dose dependent rect. 13 23
38 190.56 temperature 30 30 < th dose dependent rect. 1 23
86 192.93 temperature 20 10 > th dose dependent rect. 15 23
88 192.97 temperature 25 90 < th dose dependent rect. 9 16
109 193.59 temperature 25 90 < th dose dependent rect. 5 23
165 194.79 temperature 25 10 < th dose dependent rect. 9 15
167 194.83 temperature 20 10 > th dose dependent rect. 2 23
189 195.18 temperature 20 10 > th dose dependent rect. 4 23
232 196.18 temperature 20 10 > th dose dependent rect. 13 23
234 196.20 temperature 20 90 > th dose dependent rect. 4 23
237 196.28 temperature 25 90 < th dose dependent rect. 5 20
260 196.62 temperature 20 10 > th dose dependent rect. 11 23
288 197.15 temperature 20 10 > th dose dependent rect. 7 23
291 197.22 temperature 20 90 > th dose dependent rect. 6 23
292 197.23 temperature 25 90 < th dose dependent sin 19 NA
296 197.31 temperature 20 10 > th dose dependent rect. 9 23
318 197.74 temperature 20 10 > th dose dependent rect. 23 23
384 198.80 temperature 25 1440 < th dose dependent rect. 6 6
435 199.44 temperature 15 270 > th dose dependent rect. 17 23
511 200.56 temperature 20 10 > th dose dependent rect. 17 23
575 201.31 temperature 30 1440 < th dose dependent rect. 9 3
589 201.49 temperature 30 1440 < th dose dependent rect. 11 1
696 202.75 temperature 25 720 < th dose independent rect. 8 14
726 203.02 temperature 15 1440 > th dose dependent rect. 4 8
753 203.24 temperature 25 720 < th dose independent rect. 7 21
758 203.26 temperature 25 720 < th dose independent rect. 7 19
821 203.66 temperature 20 1440 > th dose dependent rect. 11 1
863 203.99 temperature 10 1440 > th dose dependent rect. 9 3
874 204.03 temperature 25 720 > th dose independent rect. 5 18
892 204.11 temperature 25 720 < th dose independent sin 21 NA
937 204.34 temperature 15 10 > th dose dependent sin 16 NA