Os11g0557000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phytosulfokine family protein.
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Os11g0557000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phytosulfokine family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.92 | 0.648 | 9.02 | 1.12 | 1.07 | -1.67 | 0.838 | 1.53 | 1.32 | 22.8 | 79.08 | 332 | 4.45 | 9.55 |
| 193.36 | 0.648 | 9.01 | 1.13 | 1.06 | -1.61 | 0.263 | -- | 1.33 | 22.8 | 79 | 322 | 4.4 | 9.63 |
| 192.33 | 0.646 | 9.02 | 1.09 | 1.1 | -1.64 | -- | 1.27 | 1.34 | 22.8 | 79.04 | 333 | 4.66 | 9.38 |
| 193.14 | 0.647 | 9.02 | 1.06 | 1.07 | -1.54 | -- | -- | 1.3 | 23.1 | 79.72 | 310 | 4.43 | 9.6 |
| 222.33 | 0.694 | 9.01 | 0.975 | -- | -1.78 | -- | 0.035 | 1.28 | -- | 167.4 | 341 | 4.57 | 9.73 |
| 235.88 | 0.72 | 9.04 | 1.01 | 1.99 | -- | 0.0153 | -- | 1.26 | 0.325 | -- | -- | -- | -- |
| 235.88 | 0.719 | 9.04 | 1.01 | 1.99 | -- | -- | -- | 1.26 | 0.326 | -- | -- | -- | -- |
| 221.84 | 0.694 | 9.01 | 0.993 | -- | -1.83 | -- | -- | 1.24 | -- | 125.7 | 360 | 4.52 | 9.52 |
| 222.09 | 0.694 | 9.05 | -- | 1.04 | -1.49 | -- | -- | 1.18 | 23.2 | 80.31 | 305 | 4.57 | 9.53 |
| 484.33 | 1.03 | 9 | 1.08 | -- | -- | -- | -- | 1.29 | -- | -- | -- | -- | -- |
| 262.7 | 0.758 | 9.06 | -- | 2 | -- | -- | -- | 1.14 | 0.352 | -- | -- | -- | -- |
| 246.82 | 0.732 | 9.04 | -- | -- | -1.83 | -- | -- | 1.12 | -- | 107.8 | 352 | 4.53 | 9.63 |
| 514.82 | 1.06 | 9.03 | -- | -- | -- | -- | -- | 1.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.93 | humidity | 80 | 270 | < th | dose independent | rect. | 5 | 10 |
| 20 | 196.28 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 42 | 198.96 | humidity | 80 | 270 | < th | dose independent | sin | 3 | NA |
| 61 | 200.12 | humidity | 80 | 270 | > th | dose independent | sin | 4 | NA |
| 62 | 200.18 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 9 |
| 73 | 200.60 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 14 |
| 74 | 200.67 | humidity | 90 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 77 | 200.76 | humidity | 80 | 270 | > th | dose independent | rect. | 24 | 14 |
| 86 | 201.13 | radiation | 10 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 87 | 201.18 | humidity | 80 | 10 | < th | dose independent | rect. | 4 | 14 |
| 90 | 201.38 | humidity | 80 | 10 | < th | dose independent | rect. | 2 | 16 |
| 107 | 201.68 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 18 |
| 121 | 201.91 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 154 | 202.60 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 12 |
| 157 | 202.67 | humidity | 80 | 10 | > th | dose independent | sin | 0 | NA |
| 165 | 202.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 173 | 203.03 | humidity | 70 | 10 | > th | dose dependent | sin | 23 | NA |
| 190 | 203.39 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 14 |
| 212 | 203.64 | humidity | 90 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 255 | 204.19 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 276 | 204.45 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 298 | 204.76 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 309 | 204.88 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 312 | 204.95 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 326 | 205.13 | humidity | 80 | 10 | < th | dose independent | sin | 0 | NA |
| 360 | 205.55 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 14 |
| 362 | 205.57 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 10 |
| 370 | 205.67 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 427 | 206.38 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 466 | 206.73 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 23 |
| 482 | 206.84 | humidity | 90 | 10 | < th | dose dependent | sin | 1 | NA |
| 493 | 206.93 | humidity | 70 | 270 | > th | dose dependent | sin | 3 | NA |
| 524 | 207.16 | radiation | 10 | 10 | < th | dose dependent | sin | 22 | NA |
| 549 | 207.44 | humidity | 90 | 270 | < th | dose dependent | sin | 4 | NA |
| 550 | 207.44 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 605 | 207.89 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 18 |
| 609 | 207.93 | radiation | 10 | 90 | < th | dose dependent | sin | 23 | NA |
| 705 | 208.80 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 8 |
| 750 | 209.03 | radiation | 1 | 30 | > th | dose independent | sin | 23 | NA |
| 783 | 209.27 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 801 | 209.38 | humidity | 70 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 819 | 209.49 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 892 | 209.87 | humidity | 60 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 906 | 209.92 | humidity | 50 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 910 | 209.93 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 911 | 209.93 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 23 |
| 991 | 210.17 | humidity | 70 | 270 | > th | dose dependent | rect. | 2 | 16 |