Os11g0556100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0556100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 294.34 | 0.806 | 3.55 | -1.2 | 0.354 | -0.949 | 0.689 | 7.3 | -0.0181 | 17.6 | 29.9 | 19 | -- | -- |
| 306.04 | 0.821 | 3.48 | -0.614 | 0.268 | -0.327 | 0.544 | -- | 0.0138 | 18.7 | 28.4 | 12 | -- | -- |
| 295.44 | 0.801 | 3.55 | -1.18 | 0.354 | -0.947 | -- | 7.04 | -0.0148 | 17.4 | 29.89 | 18 | -- | -- |
| 304.8 | 0.813 | 3.48 | -0.631 | 0.255 | -0.363 | -- | -- | 0.0125 | 18.1 | 28.31 | 19 | -- | -- |
| 301.23 | 0.808 | 3.53 | -1.2 | -- | -1.07 | -- | 6.88 | -0.0127 | -- | 29.9 | 18 | -- | -- |
| 311.58 | 0.828 | 3.47 | -0.542 | 0.428 | -- | 0.343 | -- | 0.0341 | 16.9 | -- | -- | -- | -- |
| 311.83 | 0.827 | 3.47 | -0.541 | 0.43 | -- | -- | -- | 0.036 | 16.6 | -- | -- | -- | -- |
| 307.82 | 0.817 | 3.47 | -0.655 | -- | -0.433 | -- | -- | 0.00311 | -- | 28.39 | 19 | -- | -- |
| 315.01 | 0.827 | 3.46 | -- | 0.303 | -0.292 | -- | -- | 0.0865 | 17.6 | 28.31 | 19 | -- | -- |
| 321.67 | 0.838 | 3.47 | -0.557 | -- | -- | -- | -- | 0.0247 | -- | -- | -- | -- | -- |
| 319.54 | 0.836 | 3.46 | -- | 0.44 | -- | -- | -- | 0.0962 | 16.6 | -- | -- | -- | -- |
| 318.92 | 0.832 | 3.46 | -- | -- | -0.382 | -- | -- | 0.0761 | -- | 28.35 | 19 | -- | -- |
| 329.86 | 0.848 | 3.45 | -- | -- | -- | -- | -- | 0.0865 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 291.48 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 4 |
| 3 | 293.27 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 7 |
| 7 | 293.47 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 22 | 16 |
| 9 | 293.49 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 22 | 293.74 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 5 |
| 77 | 294.75 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 119 | 295.38 | wind | 1.0 | 90 | < th | dose independent | rect. | 13 | 2 |
| 127 | 295.66 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 10 |
| 141 | 295.92 | temperature | 30.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 163 | 296.01 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 2 | 10 |
| 177 | 296.32 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 8 | 11 |
| 233 | 297.20 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 14 |
| 236 | 297.23 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 237 | 297.25 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 242 | 297.26 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 243 | 297.26 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 244 | 297.27 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 247 | 297.30 | humidity | 90.0 | 10 | > th | dose independent | sin | 20 | NA |
| 253 | 297.34 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 254 | 297.34 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 262 | 297.37 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 269 | 297.48 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 23 |
| 301 | 297.61 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 311 | 297.68 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 11 | 8 |
| 327 | 297.77 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 343 | 297.89 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 346 | 297.92 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 12 |
| 354 | 298.01 | temperature | 30.0 | 10 | > th | dose independent | sin | 5 | NA |
| 356 | 298.02 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 357 | 298.04 | humidity | 90.0 | 10 | > th | dose independent | rect. | 8 | 11 |
| 360 | 298.06 | wind | 1.0 | 270 | < th | dose independent | rect. | 10 | 5 |
| 364 | 298.13 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 369 | 298.18 | temperature | 30.0 | 10 | < th | dose independent | sin | 6 | NA |
| 370 | 298.19 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 395 | 298.36 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 399 | 298.37 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 401 | 298.39 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 421 | 298.45 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 425 | 298.49 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 434 | 298.52 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 435 | 298.53 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 455 | 298.59 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 10 |
| 537 | 298.82 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 539 | 298.82 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 22 |
| 542 | 298.84 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 594 | 298.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 596 | 298.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 602 | 299.02 | humidity | 90.0 | 10 | > th | dose independent | rect. | 11 | 8 |
| 610 | 299.05 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 631 | 299.14 | temperature | 15.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 636 | 299.15 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 637 | 299.15 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 644 | 299.18 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 24 | 6 |
| 659 | 299.22 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 691 | 299.25 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 745 | 299.37 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 755 | 299.39 | temperature | 30.0 | 30 | < th | dose independent | sin | 19 | NA |
| 762 | 299.40 | wind | 9.0 | 30 | > th | dose dependent | rect. | 13 | 5 |
| 772 | 299.42 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 803 | 299.48 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 810 | 299.50 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 824 | 299.52 | wind | 9.0 | 30 | > th | dose dependent | rect. | 15 | 3 |
| 832 | 299.53 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 850 | 299.55 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 894 | 299.58 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 16 |
| 918 | 299.61 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 942 | 299.63 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 948 | 299.64 | humidity | 80.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 949 | 299.64 | radiation | 20.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 956 | 299.65 | temperature | 30.0 | 90 | < th | dose independent | sin | 6 | NA |
| 957 | 299.65 | temperature | 30.0 | 30 | < th | dose independent | no | NA | NA |
| 959 | 299.65 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 970 | 299.68 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 986 | 299.70 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 24 | 3 |
| 990 | 299.71 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 991 | 299.71 | radiation | 20.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 1000 | 299.72 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 7 |