Os11g0555600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os11g0555600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.63 | 0.203 | 8.75 | -0.198 | 0.39 | 0.859 | 0.18 | 0.978 | -0.0593 | 9.78 | 22.78 | 137 | -- | -- |
| 19.14 | 0.204 | 8.77 | -0.356 | 0.411 | 0.942 | 0.262 | -- | -0.103 | 9.61 | 22.93 | 161 | -- | -- |
| 18.73 | 0.202 | 8.75 | -0.168 | 0.393 | 0.836 | -- | 1.09 | -0.0536 | 9.92 | 22.53 | 145 | -- | -- |
| 19.4 | 0.205 | 8.77 | -0.348 | 0.407 | 0.933 | -- | -- | -0.103 | 9.7 | 22.91 | 159 | -- | -- |
| 23.54 | 0.227 | 8.77 | -0.215 | -- | 0.997 | -- | 0.99 | -0.0888 | -- | 22.26 | 26 | -- | -- |
| 33.87 | 0.273 | 8.74 | -0.17 | 0.536 | -- | 0.272 | -- | 0.0308 | 12.8 | -- | -- | -- | -- |
| 34.18 | 0.274 | 8.74 | -0.16 | 0.536 | -- | -- | -- | 0.0323 | 12.8 | -- | -- | -- | -- |
| 24.25 | 0.23 | 8.79 | -0.375 | -- | 1.08 | -- | -- | -0.14 | -- | 21.9 | 9 | -- | -- |
| 22.25 | 0.22 | 8.75 | -- | 0.388 | 0.853 | -- | -- | -0.0352 | 10 | 23.96 | 123 | -- | -- |
| 52.1 | 0.337 | 8.75 | -0.179 | -- | -- | -- | -- | 0.0224 | -- | -- | -- | -- | -- |
| 34.85 | 0.276 | 8.74 | -- | 0.538 | -- | -- | -- | 0.05 | 12.8 | -- | -- | -- | -- |
| 27.57 | 0.245 | 8.76 | -- | -- | 1.02 | -- | -- | -0.0316 | -- | 24.57 | 6 | -- | -- |
| 52.94 | 0.34 | 8.75 | -- | -- | -- | -- | -- | 0.0423 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.14 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 3 | 17.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 5 | 17.50 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 14 | 17.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 17 | 17.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 19 | 17.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 26 | 17.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 40 | 17.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 55 | 17.99 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 119 | 18.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 127 | 18.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 309 | 19.12 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 312 | 19.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 317 | 19.13 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 322 | 19.15 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 794 | 20.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 958 | 20.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |