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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0551700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.049) R2 : 0.00644
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.177 (0.103) R2dN8 : 0.00831 R2N8 : 0.00644
σ : 0.922
deviance : 390.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
351.41 0.881 3.66 -0.0726 0.511 3.13 -0.186 -8.94 0.227 17.1 49.64 35 -- --
366.96 0.899 3.62 0.0684 0.572 0.72 -0.135 -- 0.214 17.3 49.64 35 -- --
351.46 0.873 3.66 -0.0724 0.512 3.12 -- -8.95 0.226 17.2 49.69 35 -- --
365.05 0.89 3.61 0.0462 0.526 0.838 -- -- 0.221 17.4 49.61 104 -- --
364.62 0.889 3.66 -0.119 -- 3.52 -- -9.59 0.218 -- 49.54 35 -- --
370.83 0.903 3.62 0.118 0.609 -- -0.0284 -- 0.203 17.3 -- -- -- --
370.83 0.902 3.62 0.118 0.609 -- -- -- 0.203 17.3 -- -- -- --
378.43 0.906 3.61 0.00245 -- 1.17 -- -- 0.218 -- 49.73 104 -- --
365.1 0.89 3.62 -- 0.521 0.862 -- -- 0.218 17.4 49.59 104 -- --
390.17 0.923 3.61 0.0972 -- -- -- -- 0.188 -- -- -- -- --
371.2 0.901 3.62 -- 0.607 -- -- -- 0.19 17.3 -- -- -- --
378.43 0.906 3.61 -- -- 1.17 -- -- 0.218 -- 49.95 104 -- --
390.42 0.922 3.62 -- -- -- -- -- 0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 344.01 humidity 50.0 30 < th dose dependent rect. 17 23
2 345.68 humidity 50.0 30 < th dose dependent rect. 17 20
3 345.73 humidity 50.0 30 < th dose independent rect. 17 20
9 346.11 humidity 50.0 30 < th dose dependent rect. 17 1
27 346.23 humidity 50.0 30 < th dose independent rect. 17 1
46 346.71 radiation 10.0 30 > th dose independent rect. 17 1
60 347.80 radiation 30.0 10 < th dose independent rect. 16 19
61 348.25 humidity 50.0 30 < th dose independent sin 8 NA
62 348.31 radiation 10.0 30 > th dose dependent rect. 17 1
78 349.69 humidity 50.0 30 < th dose independent sin 11 NA
90 350.59 atmosphere 1000.0 30 > th dose independent rect. 16 4
92 350.61 radiation 40.0 10 < th dose dependent rect. 16 19
94 350.70 atmosphere 995.0 270 > th dose independent rect. 16 1
102 351.20 atmosphere 1010.0 90 < th dose independent rect. 16 19
107 351.53 humidity 50.0 30 < th dose independent rect. 14 4
144 351.59 wind 9.0 270 < th dose dependent rect. 16 1
159 351.60 humidity 50.0 30 < th dose independent rect. 14 23
162 351.63 temperature 15.0 30 > th dose independent rect. 16 19
166 351.69 humidity 50.0 30 < th dose independent no NA NA
167 351.69 humidity 50.0 30 < th dose independent rect. 11 7
323 351.80 temperature 10.0 10 > th dose dependent rect. 16 19
327 351.84 atmosphere 995.0 30 > th dose independent rect. 16 19
328 351.85 wind 9.0 270 < th dose independent rect. 17 23
348 351.93 temperature 10.0 30 > th dose dependent rect. 11 5
392 352.09 humidity 50.0 30 > th dose independent sin 11 NA
396 352.21 precipitation 0.1 30 < th dose independent rect. 16 4
397 352.21 precipitation 0.1 30 < th dose dependent rect. 16 4
398 352.22 radiation 30.0 270 < th dose independent rect. 16 1
400 352.23 precipitation 0.1 270 < th dose independent rect. 16 1
401 352.23 precipitation 0.1 270 < th dose dependent rect. 16 1
402 352.25 humidity 90.0 10 < th dose independent rect. 11 5
405 352.28 wind 1.0 30 > th dose independent rect. 16 19
408 352.30 temperature 30.0 270 > th dose dependent rect. 13 2
409 352.31 wind 3.0 90 < th dose dependent rect. 19 1
410 352.32 wind 9.0 30 < th dose independent rect. 11 5
418 352.45 temperature 10.0 30 > th dose independent rect. 11 5
420 352.45 atmosphere 1015.0 30 < th dose independent rect. 11 5
421 352.45 precipitation 0.1 30 < th dose independent rect. 11 5
424 352.45 precipitation 0.1 30 < th dose dependent rect. 11 5
426 352.47 temperature 10.0 270 > th dose independent rect. 16 1
428 352.47 atmosphere 1010.0 270 < th dose independent rect. 16 1
431 352.47 temperature 10.0 270 > th dose independent rect. 17 23
437 352.58 wind 9.0 30 < th dose independent rect. 16 19
439 352.60 atmosphere 995.0 270 > th dose independent rect. 13 21
447 352.61 precipitation 0.1 30 < th dose independent rect. 20 20
449 352.61 precipitation 0.1 30 < th dose dependent rect. 20 20
452 352.64 radiation 40.0 270 < th dose dependent rect. 16 1
453 352.65 humidity 90.0 270 < th dose independent rect. 16 1
458 352.66 wind 1.0 30 > th dose independent rect. 16 4
482 352.75 atmosphere 1000.0 270 > th dose independent rect. 13 7
485 352.77 humidity 50.0 30 < th dose dependent sin 9 NA
488 352.79 wind 9.0 270 < th dose independent rect. 16 1
495 352.80 atmosphere 995.0 30 > th dose dependent rect. 16 4
499 352.84 precipitation 0.1 90 < th dose independent rect. 16 18
500 352.84 precipitation 0.1 90 < th dose dependent rect. 16 18
502 352.87 wind 9.0 30 < th dose independent rect. 20 20
508 352.93 radiation 30.0 30 < th dose independent rect. 16 4
511 352.95 atmosphere 995.0 270 > th dose independent rect. 15 16
514 352.96 temperature 10.0 30 > th dose independent rect. 16 4
516 352.96 atmosphere 1010.0 30 < th dose independent rect. 16 4
519 352.96 temperature 10.0 30 > th dose independent rect. 20 20
540 353.02 wind 3.0 30 < th dose dependent rect. 18 3
553 353.09 wind 9.0 30 < th dose independent rect. 16 4
554 353.09 wind 1.0 30 > th dose independent rect. 16 15
557 353.11 wind 1.0 90 > th dose independent rect. 10 6
563 353.12 wind 9.0 10 < th dose dependent rect. 16 4
565 353.14 wind 1.0 270 > th dose independent rect. 16 1
580 353.28 humidity 50.0 30 < th dose dependent sin 11 NA
611 353.43 wind 1.0 10 > th dose independent rect. 4 16
612 353.44 atmosphere 995.0 270 > th dose independent rect. 4 15
613 353.45 radiation 1.0 270 > th dose independent rect. 16 1
633 353.51 temperature 15.0 1440 > th dose independent rect. 12 5
640 353.52 temperature 10.0 1440 > th dose independent rect. 17 19
650 353.56 humidity 90.0 30 < th dose independent rect. 16 4
657 353.58 temperature 15.0 1440 > th dose independent rect. 17 4
667 353.66 atmosphere 1015.0 30 < th dose dependent rect. 11 5
677 353.75 temperature 30.0 10 > th dose dependent rect. 14 4
688 353.77 temperature 30.0 90 > th dose dependent rect. 15 2
691 353.82 temperature 10.0 270 > th dose dependent rect. 16 1
703 353.92 humidity 90.0 10 < th dose independent rect. 16 19
704 353.92 atmosphere 1015.0 10 < th dose dependent rect. 4 7
726 353.96 radiation 30.0 1440 < th dose independent rect. 17 4
732 353.96 temperature 10.0 1440 > th dose independent rect. 21 20
743 354.01 wind 1.0 10 > th dose dependent rect. 10 6
759 354.05 humidity 50.0 90 > th dose independent rect. 11 16
766 354.07 atmosphere 1015.0 90 < th dose dependent rect. 4 6
789 354.12 humidity 50.0 10 > th dose independent rect. 11 5
819 354.25 wind 3.0 90 < th dose independent rect. 19 1
821 354.25 radiation 1.0 90 < th dose dependent rect. 20 20
825 354.28 temperature 15.0 270 > th dose independent rect. 13 21
830 354.29 temperature 30.0 270 > th dose dependent rect. 10 6
835 354.31 temperature 10.0 30 > th dose dependent rect. 16 4
843 354.38 radiation 1.0 90 > th dose dependent rect. 16 15
847 354.39 atmosphere 1000.0 90 < th dose dependent rect. 7 3
849 354.40 atmosphere 995.0 30 > th dose independent rect. 11 5
876 354.46 radiation 20.0 270 > th dose independent rect. 10 3
888 354.51 humidity 90.0 270 < th dose independent rect. 10 3
889 354.51 radiation 1.0 90 > th dose independent rect. 10 6
890 354.51 atmosphere 995.0 270 > th dose dependent rect. 16 1
900 354.56 atmosphere 1015.0 30 < th dose dependent rect. 16 19
902 354.57 temperature 30.0 30 > th dose dependent sin 13 NA
904 354.59 temperature 10.0 10 > th dose dependent rect. 16 16
925 354.65 temperature 15.0 10 > th dose dependent rect. 16 8
951 354.75 temperature 10.0 270 > th dose dependent rect. 10 3
953 354.76 radiation 10.0 10 > th dose independent rect. 11 5
958 354.77 wind 1.0 270 > th dose independent rect. 10 3
970 354.83 wind 1.0 270 > th dose independent rect. 11 1
974 354.84 humidity 50.0 30 < th dose dependent rect. 14 4