Os11g0551300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LZ-NBS-LRR class RGA.
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Os11g0551300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LZ-NBS-LRR class RGA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 225.19 | 0.705 | 2.87 | 0.238 | 0.65 | -0.497 | 2.12 | -2.06 | 0.0123 | 12.6 | 10.08 | 29 | -- | -- |
| 233.11 | 0.711 | 2.86 | 0.201 | 0.727 | -0.564 | 0.0822 | -- | 0.0325 | 12.4 | 8.13 | 26 | -- | -- |
| 231.6 | 0.709 | 2.84 | 0.266 | 0.727 | -0.567 | -- | -0.572 | 0.0289 | 12.5 | 9.45 | 21 | -- | -- |
| 232.65 | 0.71 | 2.85 | 0.202 | 0.724 | -0.562 | -- | -- | 0.0211 | 12.5 | 8.03 | 62 | -- | -- |
| 238.67 | 0.72 | 2.87 | 0.285 | -- | -0.0416 | -- | -0.635 | -0.00709 | -- | 11.23 | 14 | -- | -- |
| 240.34 | 0.727 | 2.87 | 0.241 | 0.118 | -- | 0.217 | -- | -0.00335 | 14.6 | -- | -- | -- | -- |
| 240.47 | 0.726 | 2.87 | 0.246 | 0.119 | -- | -- | -- | -0.00233 | 13.9 | -- | -- | -- | -- |
| 240.79 | 0.723 | 2.87 | 0.25 | -- | -0.0728 | -- | -- | -7.47e-05 | -- | 10 | 25 | -- | -- |
| 232.01 | 0.709 | 2.86 | -- | 0.815 | -0.657 | -- | -- | -0.0191 | 12.7 | 5.57 | 89 | -- | -- |
| 241.32 | 0.726 | 2.87 | 0.241 | -- | -- | -- | -- | -0.00505 | -- | -- | -- | -- | -- |
| 242.07 | 0.728 | 2.88 | -- | 0.114 | -- | -- | -- | -0.0297 | 13.8 | -- | -- | -- | -- |
| 242.36 | 0.725 | 2.88 | -- | -- | -0.0764 | -- | -- | -0.0246 | -- | 9.3 | 44 | -- | -- |
| 242.85 | 0.727 | 2.88 | -- | -- | -- | -- | -- | -0.0318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.99 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 1 |
| 4 | 210.00 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 7 | 210.75 | radiation | 10.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 8 | 211.70 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 9 | 212.22 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 16 | 212.78 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 11 | 3 |
| 18 | 213.23 | radiation | 10.0 | 270 | < th | dose independent | rect. | 11 | 3 |
| 24 | 214.49 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 12 | 7 |
| 44 | 217.70 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 8 | 8 |
| 49 | 218.30 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 5 |
| 63 | 219.19 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 4 |
| 65 | 219.21 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 68 | 219.25 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 11 |
| 110 | 220.80 | radiation | 10.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 112 | 220.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 1 |
| 149 | 221.80 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 153 | 221.86 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 154 | 221.87 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 5 |
| 169 | 222.12 | radiation | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 171 | 222.38 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 179 | 222.64 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 195 | 223.01 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 3 |
| 243 | 223.50 | radiation | 10.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 252 | 223.60 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 255 | 223.60 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 262 | 223.76 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 11 |
| 286 | 223.98 | radiation | 10.0 | 30 | < th | dose independent | rect. | 8 | 23 |
| 341 | 224.53 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 12 | 4 |
| 404 | 224.90 | radiation | 10.0 | 30 | > th | dose independent | sin | 0 | NA |
| 407 | 224.92 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 409 | 224.95 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 11 |
| 424 | 224.96 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 428 | 225.02 | radiation | 10.0 | 30 | < th | dose independent | sin | 0 | NA |
| 467 | 225.25 | radiation | 10.0 | 30 | > th | dose independent | no | NA | NA |
| 563 | 225.37 | radiation | 10.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 564 | 225.38 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 568 | 225.43 | humidity | 80.0 | 30 | > th | dose independent | rect. | 13 | 3 |
| 570 | 225.43 | radiation | 10.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 616 | 225.69 | radiation | 10.0 | 30 | < th | dose independent | no | NA | NA |
| 617 | 225.70 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 631 | 225.77 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 4 | 3 |
| 636 | 225.78 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 645 | 225.80 | radiation | 10.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 756 | 225.91 | radiation | 10.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 785 | 225.95 | radiation | 10.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 787 | 225.96 | radiation | 10.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 836 | 226.13 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 23 |