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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0550500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LZ-NBS-LRR class RGA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.26 (0.0329) R2 : 0.784
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.06 (0.0962) R2dE : 0.536 R2E : -0.0258
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.49 (0.0724) R2dN8 : 0.809 R2N8 : 0.247
σ : 0.61
deviance : 171.82
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.66
memory length : 47520
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.21 0.578 4.99 2.82 0.272 2.24 0.28 2.82 -1.73 15.6 20 6285 -- --
156.52 0.583 5.1 2.76 0.247 1.39 0.189 -- -1.75 16 21.59 6532 -- --
151.45 0.573 4.99 2.83 0.273 2.24 -- 2.83 -1.73 15.4 20.01 6284 -- --
154.91 0.58 5.12 2.54 0.255 1.57 -- -- -1.85 14.6 21 6434 -- --
155.6 0.581 4.99 2.82 -- 2.22 -- 2.79 -1.73 -- 20.06 6266 -- --
204.71 0.671 5 3.62 0.252 -- 0.329 -- -1.33 16.2 -- -- -- --
205 0.67 5 3.62 0.254 -- -- -- -1.33 16 -- -- -- --
159.17 0.588 5.12 2.53 -- 1.56 -- -- -1.86 -- 21.06 6354 -- --
167.24 0.602 5.27 -- 0.248 3.07 -- -- -2.5 15.8 18.6 47520 -- --
208.52 0.675 5 3.61 -- -- -- -- -1.33 -- -- -- -- --
550.42 1.1 5.09 -- 0.184 -- -- -- -1.73 16.2 -- -- -- --
171.82 0.61 5.26 -- -- 3.06 -- -- -2.49 -- 18.66 47520 -- --
552.24 1.1 5.09 -- -- -- -- -- -1.73 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.59 humidity 60 43200 > th dose independent rect. 23 11
9 137.16 humidity 60 43200 > th dose independent rect. 9 1
10 137.21 humidity 60 43200 < th dose independent rect. 9 1
16 138.21 humidity 60 43200 < th dose independent rect. 24 10
22 138.29 wind 1 43200 < th dose dependent rect. 19 11
35 139.53 wind 1 14400 < th dose dependent rect. 23 8
38 139.76 wind 1 14400 < th dose dependent rect. 24 6
51 141.55 wind 1 14400 < th dose dependent rect. 1 4
77 142.95 wind 1 43200 < th dose dependent sin 11 NA
94 143.79 humidity 60 43200 < th dose dependent rect. 11 1
104 144.08 humidity 60 43200 < th dose dependent rect. 20 16
112 144.17 humidity 60 43200 < th dose dependent rect. 24 12
131 144.40 humidity 60 43200 < th dose dependent rect. 9 3
132 144.44 humidity 60 43200 < th dose dependent sin 7 NA
151 144.83 wind 1 43200 > th dose independent rect. 21 9
162 145.16 wind 1 43200 < th dose independent rect. 19 11
180 145.44 wind 1 43200 < th dose independent rect. 21 9
191 145.58 humidity 70 43200 < th dose dependent rect. 7 2
266 146.45 wind 9 43200 > th dose independent rect. 11 1
340 147.24 radiation 20 43200 < th dose independent rect. 15 1
364 147.50 radiation 20 43200 < th dose independent rect. 15 6
370 147.51 radiation 20 43200 < th dose independent rect. 15 13
397 147.93 radiation 20 43200 > th dose dependent rect. 15 16
398 147.95 radiation 20 43200 > th dose dependent rect. 15 1
402 148.01 wind 1 43200 < th dose dependent rect. 8 1
404 148.08 humidity 50 43200 > th dose independent rect. 19 23
405 148.09 humidity 50 43200 > th dose independent rect. 13 23
414 148.15 humidity 50 43200 > th dose independent rect. 23 19
430 148.18 humidity 50 43200 > th dose independent rect. 3 15
438 148.26 humidity 50 43200 > th dose independent rect. 9 9
446 148.30 humidity 50 43200 > th dose independent rect. 15 23
462 148.40 humidity 50 43200 > th dose independent rect. 9 23
480 148.47 humidity 50 43200 > th dose independent rect. 13 4
485 148.49 humidity 50 43200 > th dose independent sin 20 NA
490 148.49 humidity 50 43200 > th dose independent rect. 2 23
491 148.49 humidity 50 43200 > th dose independent rect. 23 23
492 148.50 humidity 50 43200 > th dose independent no NA NA
496 148.50 humidity 50 43200 > th dose independent rect. 6 23
503 148.51 humidity 50 43200 > th dose independent rect. 2 20
512 148.52 humidity 50 43200 > th dose independent rect. 9 16
537 148.54 humidity 50 43200 > th dose independent rect. 9 13
565 148.56 radiation 10 43200 < th dose dependent rect. 6 1
661 148.72 radiation 10 43200 < th dose dependent rect. 18 13
680 148.85 humidity 50 43200 < th dose independent rect. 13 23
683 148.87 temperature 25 1440 < th dose dependent rect. 21 2
698 148.92 wind 9 43200 < th dose independent rect. 11 1
699 148.92 temperature 20 4320 > th dose independent rect. 3 1
729 148.98 atmosphere 1015 43200 > th dose dependent rect. 22 2
742 149.04 radiation 10 43200 < th dose dependent rect. 17 15
759 149.07 temperature 25 1440 < th dose dependent rect. 21 4
762 149.11 humidity 50 43200 > th dose independent rect. 14 2
763 149.13 temperature 20 4320 < th dose independent rect. 3 1
781 149.25 radiation 10 43200 < th dose dependent rect. 3 4
791 149.27 radiation 10 43200 < th dose dependent rect. 20 11
830 149.52 humidity 50 43200 < th dose independent rect. 13 5
841 149.63 humidity 50 43200 < th dose independent rect. 13 19
858 149.72 humidity 50 43200 < th dose independent rect. 19 23
868 149.75 radiation 40 43200 < th dose dependent rect. 15 16
876 149.79 humidity 50 43200 < th dose independent rect. 3 15
889 149.83 humidity 50 43200 < th dose independent rect. 13 9
918 149.88 humidity 50 43200 < th dose independent rect. 9 9
937 149.97 wind 9 43200 > th dose independent rect. 10 6
941 149.98 humidity 50 43200 < th dose independent rect. 15 23
957 149.99 humidity 50 43200 < th dose independent rect. 9 23
964 150.01 humidity 50 43200 < th dose independent sin 19 NA
971 150.03 humidity 50 43200 < th dose independent no NA NA
972 150.03 humidity 50 43200 < th dose independent rect. 3 19
992 150.04 atmosphere 1010 43200 > th dose dependent rect. 3 1